From 142c6fbb162f682ddece7fe780e7b1da3c9f0f3c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Zolt=C3=A1n=20BARCZA?= Date: Wed, 23 Jan 2019 12:35:11 +0100 Subject: [PATCH] Delete maize.epc --- RBBGCMuso/inst/examples/hhs/maize.epc | 180 -------------------------- 1 file changed, 180 deletions(-) delete mode 100644 RBBGCMuso/inst/examples/hhs/maize.epc diff --git a/RBBGCMuso/inst/examples/hhs/maize.epc b/RBBGCMuso/inst/examples/hhs/maize.epc deleted file mode 100644 index 2f0b95f..0000000 --- a/RBBGCMuso/inst/examples/hhs/maize.epc +++ /dev/null @@ -1,180 +0,0 @@ -ECOPHYS FILE - MAIZE ----------------------------------------------------------------------------------------- -FLAGS -0 (flag) biome type flag (1 = WOODY 0 = NON-WOODY) -0 (flag) woody type flag (1 = EVERGREEN 0 = DECIDUOUS) -0 (flag) photosyn. type flag (1 = C3 PSN 0 = C4 PSN) -0 (flag) phenology flag (1 = MODEL PHENOLOGY 0 = USER-SPECIFIED PHENOLOGY) -1 (flag) transferGDD flag (1= transfer calc. from GDD 0 = transfer calc. from EPC) -1 (flag) q10 flag (1 = temperature dependent q10 value; 0= constans q10 value) -0 (flag) acclimation flag (1 = acclimation 0 = no acclimation) -1 (flag) CO2 conductance reduction flag (0: no effect, 1: multiplier) -0 (flag) use GSI index to calculate growing season (0: no GSI, 1: GSI) -0 (flag) soil temperature calculation method (0: Zheng, 1: DSSAT) -1 (flag) soil hydrological calculation method (0: Richards, 1: tipping DSSAT) -0 (int) discretization level of SWC calculation (0: low, 1: medium, 2: high) -0 (flag) photosynthesis calculation method (0: Farquhar, 1: DSSAT) -0 (flag) evapotranspiration calculation method (0: Penman-Montieth, 1: Priestly-Taylor) -0 (flag) radiation calculation method (0: SWabs, 1: Rn) ----------------------------------------------------------------------------------------- -PLANT FUNCTIONING PARAMETERS -0 (yday) yearday to start new growth (when phenology flag = 0) -364 (yday) yearday to end litterfall (when phenology flag = 0) -0.4 (prop.) transfer growth period as fraction of growing season -0. (prop.) litterfall as fraction of growing season -8 (Celsius) base temperature --9999 (Celsius) minimum temperature for growth displayed on current day (-9999: no T-dependence of allocation) --9999 (Celsius) optimal1 temperature for growth displayed on current day (-9999: no T-dependence of allocation) --9999 (Celsius) optimal2 temperature for growth displayed on current day (-9999: no T-dependence of allocation) --9999 (Celsius) maxmimum temperature for growth displayed on current day (-9999: no T-dependence of allocation) --9999 (Celsius) minimum temperature for carbon assimilation displayed on current day (-9999: no limitation) --9999 (Celsius) optimal1 temperature for carbon assimilation displayed on current day (-9999: no limitation) --9999 (Celsius) optimal2 temperature for carbon assimilation displayed on current day (-9999: no limitation) --9999 (Celsius) maxmimum temperature for carbon assimilation displayed on current day (-9999: no limitation) -1.0 (1/yr) annual leaf and fine root turnover fraction -0.00 (1/yr) annual live wood turnover fraction -0.0 (1/yr) annual whole-plant mortality fraction -0.0 (1/yr) annual fire mortality fraction -40.0 (kgC/kgN) C:N of leaves -65.0 (kgC/kgN) C:N of leaf litter, after retranslocation ion -42.0 (kgC/kgN) C:N of fine roots -50.0 *(kgC/kgN) C:N of fruit -50.0 (kgC/kgN) C:N of soft stem -0.0 (kgC/kgN) C:N of live wood -0.0 (kgC/kgN) C:N of dead wood -0.68 (DIM) leaf litter labile proportion -0.23 (DIM) leaf litter cellulose proportion -0.34 (DIM) fine root labile proportion -0.44 (DIM) fine root cellulose proportion -0.68 *(DIM) fruit litter labile proportion -0.23 *(DIM) fruit litter cellulose proportion -0.68 (DIM) soft stem litter labile proportion -0.23 (DIM) soft stem litter cellulose proportion -0.00 *(DIM) dead wood cellulose proportion -0.01 (1/LAI/d) canopy water interception coefficient -0.69 (DIM) canopy light extinction coefficient -2.0 (g/MJ) potential radiation use efficiency -0.781 (DIM) radiation parameter1 (Jiang et al.2015) --13.596 (DIM) radiation parameter2 (Jiang et al.2015) -2.0 (DIM) all-sided to projected leaf area ratio -2.0 (DIM) ratio of shaded SLA:sunlit SLA -0.14 (DIM) fraction of leaf N in Rubisco CLM alapjan -0.0424 (DIM) fraction of leaf N in PEP Carboxylase -0.012 (m/s) maximum stomatal conductance (projected area basis) -0.00006 (m/s) cuticular conductance (projected area basis) -0.04 (m/s) boundary layer conductance (projected area basis) -0.99 (prop) relative SWC (prop. to FC) to calc. soil moisture limit 1 (-9999: not used) -1.0 (prop) relative SWC (prop. to SAT) to calc. soil moisture limit 2 (-9999: not used) --9999 (prop) relative PSI (prop. to FC) to calc. soil moisture limit 1 (-9999: not used) --9999 (prop) relative PSI (prop. to SAT) to calc. soil moisture limit 2 (-9999: not used) -1000 (Pa) vapor pressure deficit: start of conductance reduction -5000 (Pa) vapor pressure deficit: complete conductance reduction -2.0 (m) maximum height of plant -25 *(kgC/m2) stem weight at which maximum height attended -1.7 (m) (m) maximum depth of rooting zonemaximum depth of rooting zone -3.67 (DIM) root distribution parameter -0.4 (kgC/m2) rootlenght parameter 1 (estimated max root weight) -0.5 (prop.) rootlenght parameter 2 (slope) -0.3 (prop.) growth resp per unit of C grown -0.218 (kgC/kgN/d) maintenance respiration in kgC/day per kg of tissue N -0.1 (DIM) theoretical maximum prop. of non-structural and structural carbohydrates -0.3 (DIM) prop. of non-structural carbohydrates available for maintanance respiration -0.0005 (kgN/m2/yr) symbiotic+asymbiotic fixation of N ----------------------------------------------------------------------------------------- -CROP SPECIFIC PARAMETERS -2 (DIM) number of the first phenophase when germination is complete (from 2 to 7; 0: NO specific) -3 (DIM) number of the first phenophase when emergence is complete (from 3 to 7; 0: NO specific) -0.5 (prop.) critical relative SWC (prop. to FC) in germination --9999 (DIM) number of phenophase of photoperiodic slowing effect (from 1 to 7; -9999: NO) -16 (hour) critical photoslow daylength -0.005 (DIM) slope of relative photoslow development rate --9999 (DIM) number of phenophase of vernalization (from 1 to 7; -9999: NO) -0 (Celsius) critical vernalization temperature 1 -5 (Celsius) critical vernalization temperature 2 -8 (Celsius) critical vernalization temperature 3 -15 (Celsius) critical vernalization temperature 4 -0.04 (DIM) slope of relative vernalization development rate -50 (n) required vernalization days (in vernalization development rate) -5 (DIM) number of flowering phenophase (from 1 to 7; -9999: NO) -35 (Celsius) critical flowering heat stress temperature 1 -40 (Celsius) critical flowering heat stress temperature 2 -0.2 (prop.) mortality parameter of flowering thermal stress ----------------------------------------------------------------------------------------- -SENESCENCE AND SOIL PARAMETERS -0.01 (prop.) maximum senescence mortality coefficient of aboveground plant material -0.01 (prop.) maximum senescence mortality coefficient of belowground plant material -0.0 (prop.) maximum senescence mortality coefficient of non-structured plant material -2 (prop) effect of extreme high temperature on senesncene mortality -35 (Celsius) lower limit extreme high temperature effect on senescence mortality -40 (Celsius) upper limit extreme high temperature effect on senescence mortality -1000 (Celsius) maximal lifetime of plant tissue (-9999: no genetically programmed senescence) -0.01 (prop.) turnover rate of wilted standing biomass to litter -0.05 (prop.) turnover rate of non-woody cut-down biomass to litter -0.01 (prop.) turnover rate of woody cut-down biomass to litter -30 (prop.) drought tolerance parameter (critical value of DSWS) -0.02 (prop.) denitrification rate per g of CO2 respiration of SOM -0.5 (prop.) nitrification coefficient 1 -0.4 (prop.) nitrification coefficient 2 -0.02 (prop.) coefficient of N2O emission of nitrification -0.5 (prop.) proprortion of NH4 flux of N-deposition -0.5 (prop.) NH4 mobilen proportion -1.0 (prop.) NO3 mobilen proportion -10 (m) e-folding depth of decomposition rate's depth scalar -0.001 (prop.) fraction of dissolved part of SOIL1 organic matter -0.001 (prop.) fraction of dissolved part of SOIL2 organic matter -0.001 (prop.) fraction of dissolved part of SOIL3 organic matter -0.001 (prop.) fraction of dissolved part of SOIL4 organic matter -0.6 (DIM) ratio of bare soil evaporation and pot.evaporation ----------------------------------------------------------------------------------------- -RATE SCALARS -0.39 (DIM) respiration fractions for fluxes between compartments (l1s1) -0.55 (DIM) respiration fractions for fluxes between compartments (l2s2) -0.29 (DIM) respiration fractions for fluxes between compartments (l4s3) -0.28 (DIM) respiration fractions for fluxes between compartments (s1s2) -0.46 (DIM) respiration fractions for fluxes between compartments (s2s3) -0.55 (DIM) respiration fractions for fluxes between compartments (s3s4) -0.7 (DIM) rate constant scalar of labile litter pool -0.07 (DIM) rate constant scalar of cellulose litter pool -0.014 (DIM) rate constant scalar of lignin litter pool -0.07 (DIM) rate constant scalar of fast microbial recycling pool -0.014 (DIM) rate constant scalar of medium microbial recycling pool -0.0014 (DIM) rate constant scalar of slow microbial recycling pool -0.0001 (DIM) rate constant scalar of recalcitrant SOM (humus) pool -0.001 (DIM) rate constant scalar of physical fragmentation of coarse woody debris ----------------------------------------------------------------------------------------- -GROWING SEASON PARAMETERS -5 (kg/m2) crit. amount of snow limiting photosyn. -20 (Celsius) limit1 (under:full constrained) of HEATSUM index -60 (Celsius) limit2 (above:unconstrained) of HEATSUM index -0 (Celsius) limit1 (under:full constrained) of TMIN index -5 (Celsius) limit2 (above:unconstrained) of TMIN index -4000 (Pa) limit1 (above:full constrained) of VPD index -1000 (Pa) limit2 (under:unconstrained) of VPD index -0 (s) limit1 (under:full constrained) of DAYLENGTH index -0 (s) limit2 (above:unconstrained) of DAYLENGTH index -10 (day) moving average (to avoid the effects of extreme events) -0.10 (dimless) GSI limit1 (greater that limit -> start of vegper) -0.01 (dimless) GSI limit2 (less that limit -> end of vegper) ----------------------------------------------------------------------------------------- -CH4 PARAMETERS -212.5 (DIM) param1 for CH4 calculations (empirical function of BD) -1.81 (DIM) param2 for CH4 calculations (empirical function of BD) --1.353 (DIM) param1 for CH4 calculations (empirical function of VWC) -0.2 (DIM) param2 for CH4 calculations (empirical function of VWC) -1.781 (DIM) param3 for CH4 calculations (empirical function of VWC) -6.786 (DIM) param4 for CH4 calculations (empirical function of VWC) -0.010 (DIM) param1 for CH4 calculations (empirical function of Tsoil) ----------------------------------------------------------------------------------------- -PHENOLOGICAL (ALLOCATION) PARAMETERS (7 phenological phases) -csirazas keles levelnov_felfut levelnov_lin viragzas szemtelitodes erett (text) name of the phenophase -0 45 225 630 90 730 10000 (Celsius) length of phenophase (GDD) -0.0 0.5 0.60 0.30 0.05 0.0 0. (ratio) leaf ALLOCATION -0.0 0.5 0.35 0.25 0.20 0.15 0. (ratio) fine root ALLOCATION -0.0 0. 0.0 0.0 0.05 0.65 1. (ratio) fruit ALLOCATION -0.0 0. 0.05 0.45 0.70 0.20 0. (ratio) soft stem ALLOCATION -0 0 0 0 0 0 0 (ratio) live woody stem ALLOCATION -0 0 0 0 0 0 0 (ratio) dead woody stem ALLOCATION -0 0 0 0 0 0 0 (ratio) live coarse root ALLOCATION -0 0 0 0 0 0 0 (ratio) dead coarse root ALLOCATION -50 50 50 50 50 50 50 (m2/kgC) canopy average specific leaf area (projected area basis) -1.0 1.0 1.0 1.0 1.0 1.0 1.0 (prop.) current growth proportion