upload files for muso 6.1
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Zoltán BARCZA
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139
RBBGCMuso/inst/examples/hhs/c3grass_muso6.epc
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139
RBBGCMuso/inst/examples/hhs/c3grass_muso6.epc
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ECOPHYS FILE - C3 grass muso6
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----------------------------------------------------------------------------------------
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FLAGS
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0 (flag) biome type flag (1 = WOODY 0 = NON-WOODY)
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0 (flag) woody type flag (1 = EVERGREEN 0 = DECIDUOUS)
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1 (flag) photosyn. type flag (1 = C3 PSN 0 = C4 PSN)
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----------------------------------------------------------------------------------------
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PLANT FUNCTIONING PARAMETERS
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0 (yday) yearday to start new growth (when phenology flag = 0)
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364 (yday) yearday to end litterfall (when phenology flag = 0)
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1.0 (prop.) transfer growth period as fraction of growing season (when transferGDD_flag = 0)
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1.0 (prop.) litterfall as fraction of growing season (when transferGDD_flag = 0)
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0 (Celsius) base temperature
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-9999 (Celsius) minimum temperature for growth displayed on current day (-9999: no T-dependence)
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-9999 (Celsius) optimal1 temperature for growth displayed on current day (-9999: no T-dependence)
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-9999 (Celsius) optimal2 temperature for growth displayed on current day (-9999: no T-dependence)
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-9999 (Celsius) maxmimum temperature for growth displayed on current day (-9999: no T-dependence)
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-9999 (Celsius) minimum temperature for carbon assimilation on current day (-9999: no T-dependence)
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-9999 (Celsius) optimal1 temperature for carbon assimilation on current day (-9999: no T-dependence)
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-9999 (Celsius) optimal2 temperature for carbon assimilation on current day (-9999: no T-dependence)
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-9999 (Celsius) maxmimum temperature for carbon assimilation on current day (-9999: no T-dependence)
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1.0 (1/yr) annual leaf and fine root turnover fraction
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0.00 (1/yr) annual live wood turnover fraction
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0.0 (1/yr) annual fire mortality fraction
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0.01 (1/vegper) whole-plant mortality fraction in vegetation period
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36.6 (kgC/kgN) C:N of leaves
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45.0 (kgC/kgN) C:N of leaf litter, after retranslocation
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50.0 (kgC/kgN) C:N of fine roots
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36.6 *(kgC/kgN) C:N of fruit
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36.6 (kgC/kgN) C:N of soft stem
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0.0 *(kgC/kgN) C:N of live wood
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0.0 *(kgC/kgN) C:N of dead wood
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0.4 (kgC/kgDM) dry matter carbon content of leaves
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0.4 (kgC/kgDM) dry matter carbon content of leaf litter
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0.4 (kgC/kgDM) dry matter carbon content of fine roots
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0.4 *(kgC/kgDM) dry matter carbon content of fruit
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0.4 (kgC/kgDM) dry matter carbon content of soft stem
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0.4 *(kgC/kgDM) dry matter carbon content of live wood
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0.4 *(kgC/kgDM) dry matter carbon content of dead wood
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0.68 (DIM) leaf litter labile proportion
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0.23 (DIM) leaf litter cellulose proportion
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0.34 (DIM) fine root labile proportion
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0.44 (DIM) fine root cellulose proportion
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0.68 *(DIM) fruit litter labile proportion
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0.23 *(DIM) fruit litter cellulose proportion
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0.68 (DIM) soft stem litter labile proportion
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0.23 (DIM) soft stem litter cellulose proportion
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0.00 *(DIM) dead wood cellulose proportion
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0.01 (1/LAI/d) canopy water interception coefficient
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0.7 (DIM) canopy light extinction coefficient
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0.6 (g/MJ) potential radiation use efficiency
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0.781 (DIM) radiation parameter1 (Jiang et al.2015)
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-13.596 (DIM) radiation parameter2 (Jiang et al.2015)
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2.0 (DIM) all-sided to projected leaf area ratio
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2.0 (DIM) ratio of shaded SLA:sunlit SLA
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0.3 (DIM) fraction of leaf N in Rubisco
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0.03 (DIM) fraction of leaf N in PEP Carboxylase
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0.002 (m/s) maximum stomatal conductance (projected area basis)
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0.00006 (m/s) cuticular conductance (projected area basis)
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0.039 (m/s) boundary layer conductance (projected area basis)
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1.0 (m) maximum height of plant
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0.8 (kgC) stem weight corresponding to maximum height
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0.5 (dimless) plant height function shape parameter (slope)
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1.0 (m) maximum depth of rooting zone
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2.67 (DIM) root distribution parameter
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0.4 (kgC) root weight corresponding to max root depth
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0.5 (dimless) root depth function shape parameter (slope)
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1000 (m/kg) root weight to rooth length conversion factor
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0.3 (prop.) growth resp per unit of C grown
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0.195 (kgC/kgN/d) maintenance respiration in kgC/day per kg of tissue N
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0.1 (DIM) theoretical maximum prop. of non-structural and structural carbohydrates
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0.24 (DIM) prop. of non-structural carbohydrates available for maintanance respiration
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0.0048 (kgN/m2/yr) symbiotic+asymbiotic fixation of N
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0 (day) time delay for temperature in photosynthesis acclimation
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----------------------------------------------------------------------------------------
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CROP SPECIFIC PARAMETERS
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0 (DIM) number of phenophase of germination (from 1 to 7; 0: NO specific)
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0 (DIM) number of phenophase of emergence (from 1 to 7; 0: NO specific)
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0.5 (prop.) critical VWCratio (prop. to FC-WP) in germination
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0 (DIM) number of phenophase of photoperiodic slowing effect (from 1 to 7; 0: NO effect)
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20 (hour) critical photoslow daylength
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0.005 (DIM) slope of relative photoslow development rate
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0 (DIM) number of phenophase of vernalization (from 1 to 7; 0: NO effect)
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0 (Celsius) critical vernalization temperature 1
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5 (Celsius) critical vernalization temperature 2
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8 (Celsius) critical vernalization temperature 3
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15 (Celsius) critical vernalization temperature 4
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0.04 (DIM) slope of relative vernalization development rate
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50 (n) required vernalization days (in vernalization development rate)
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0 (DIM) number of flowering phenophase (from 1 to 7;0: NO effect)
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35 (Celsius) critical flowering heat stress temperature 1
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40 (Celsius) critical flowering heat stress temperature 2
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0.2 (prop.) theoretical maximum of flowering thermal stress mortality parameter
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----------------------------------------------------------------------------------------
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STRESS AND SENESCENCE PARAMETERS
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1.0 (prop) VWC ratio to calc. soil moisture limit 1 (prop. to FC-WP)
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0.95 (prop) VWC ratio to calc. soil moisture limit 2 (prop. to SAT-FC)
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0.4 (prop) minimum of soil moisture limit2 multiplicator (full anoxic stress value)
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1000 (Pa) vapor pressure deficit: start of conductance reduction
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2800 (Pa) vapor pressure deficit: complete conductance reduction
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0.03 (prop.) maximum senescence mortality coefficient of aboveground plant material
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0.02 (prop.) maximum senescence mortality coefficient of belowground plant material
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0.01 (prop.) maximum senescence mortality coefficient of non-structured plant material
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35 (Celsius) lower limit extreme high temperature effect on senescence mortality
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40 (Celsius) upper limit extreme high temperature effect on senescence mortality
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0.01 (prop.) turnover rate of wilted standing biomass to litter
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0.047 (prop.) turnover rate of non-woody cut-down biomass to litter
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0.01 (prop.) turnover rate of woody cut-down biomass to litter
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30 (nday) drought tolerance parameter (critical value of DSWS)
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0.2 (dimless) effect of soilstress factor on photosynthesis (1: full effect, 0: no effect)
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----------------------------------------------------------------------------------------
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GROWING SEASON PARAMETERS
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5 (kg/m2) crit. amount of snow limiting photosyn.
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20 (Celsius) limit1 (under:full constrained) of HEATSUM index
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60 (Celsius) limit2 (above:unconstrained) of HEATSUM index
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0 (Celsius) limit1 (under:full constrained) of TMIN index
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5 (Celsius) limit2 (above:unconstrained) of TMIN index
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4000 (Pa) limit1 (above:full constrained) of VPD index
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1000 (Pa) limit2 (under:unconstrained) of VPD index
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0 (s) limit1 (under:full constrained) of DAYLENGTH index
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0 (s) limit2 (above:unconstrained) of DAYLENGTH index
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10 (day) moving average (to avoid the effects of extreme events)
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0.10 (dimless) GSI limit1 (greater that limit -> start of vegper)
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0.01 (dimless) GSI limit2 (less that limit -> end of vegper)
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----------------------------------------------------------------------------------------
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PHENOLOGICAL (ALLOCATION) PARAMETERS (7 phenological phases)
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phase1 phase2 phase3 phase4 phase5 phase6 phase7 (text) name of the phenophase
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10000 200 500 200 400 200 100 (Celsius) length of phenophase (GDD)
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0.3 0.3 0.3 0.3 0.3 0.3 0.3 (ratio) leaf ALLOCATION
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0.5 0.5 0.5 0.5 0.5 0.5 0.5 (ratio) fine root ALLOCATION
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0.0 0.0 0.0 0.0 0.0 0.0 0.0 (ratio) fruit ALLOCATION
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0.2 0.2 0.2 0.2 0.2 0.2 0.2 (ratio) soft stem ALLOCATION
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0 0 0 0 0 0 0 (ratio) live woody stem ALLOCATION
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0 0 0 0 0 0 0 (ratio) dead woody stem ALLOCATION
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0 0 0 0 0 0 0 (ratio) live coarse root ALLOCATION
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0 0 0 0 0 0 0 (ratio) dead coarse root ALLOCATION
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49 49 49 49 49 49 49 (m2/kgC) canopy average specific leaf area (projected area basis)
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0.37 0.37 0.37 0.37 0.37 0.37 0.37 (prop.) current growth proportion
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10000 10000 10000 10000 10000 10000 10000 (Celsius) maximal lifetime of plant tissue
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63
RBBGCMuso/inst/examples/hhs/hhs.soi
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RBBGCMuso/inst/examples/hhs/hhs.soi
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SOILPROP FILE - hhs muso6
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----------------------------------------------------------------------------------------
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NITROGEN AND DECOMPOSITION PARAMETERS
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0.1 (prop.) denitrification rate per g of CO2 respiration of SOM
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0.2 (prop.) nitrification coefficient 1
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0.07 (prop.) nitrification coefficient 2
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0.02 (prop.) coefficient of N2O emission of nitrification
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0.1 (prop.) NH4 mobilen proportion
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1.0 (prop.) NO3 mobilen proportion
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10 (m) e-folding depth of decomposition rate's depth scalar
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0.002 (prop.) fraction of dissolved part of SOIL1 organic matter
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0.002 (prop.) fraction of dissolved part of SOIL2 organic matter
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0.002 (prop.) fraction of dissolved part of SOIL3 organic matter
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0.002 (prop.) fraction of dissolved part of SOIL4 organic matter
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0.1 (prop.) minimum WFPS for scalar of nitrification calculation
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0.45 (prop.) lower optimum WFPS for scalar of nitrification calculation
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0.55 (prop.) higher optimum WFPS for scalar of nitrification calculation
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0.2 (prop.) minimum value for saturated WFPS scalar of nitrification calculation
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10 (ppm) critical value of dissolved N and C in bottom (inactive layer)
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----------------------------------------------------------------------------------------
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RATE SCALARS
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0.35 (prop) respiration fractions for fluxes between compartments (l1s1)
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0.50 (prop) respiration fractions for fluxes between compartments (l2s2)
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0.26 (prop) respiration fractions for fluxes between compartments (l4s3)
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0.25 (prop) respiration fractions for fluxes between compartments (s1s2)
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0.41 (prop) respiration fractions for fluxes between compartments (s2s3)
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0.50 (prop) respiration fractions for fluxes between compartments (s3s4)
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0.7 (1/day) rate constant scalar of labile litter pool
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0.07 (1/day) rate constant scalar of cellulose litter pool
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0.014 (1/day) rate constant scalar of lignin litter pool
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0.07 (1/day) rate constant scalar of fast microbial recycling pool
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0.014 (1/day) rate constant scalar of medium microbial recycling pool
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0.0014 (1/day) rate constant scalar of slow microbial recycling pool
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0.0001 (1/day) rate constant scalar of recalcitrant SOM (humus) pool
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0.001 (1/day) rate constant scalar of physical fragmentation of coarse woody debris
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----------------------------------------------------------------------------------------
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CH4 PARAMETERS
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212.5 (DIM) soil CH4 emission bulk density dependence parameter1
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1.81 (DIM) soil CH4 emission bulk density dependence parameter2
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-1.353 (DIM) soil CH4 emission soil water content dependence parameter1
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0.2 (DIM) soil CH4 emission soil water content dependence parameter2
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1.781 (DIM) soil CH4 emission soil water content dependence parameter3
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6.786 (DIM) soil CH4 emission soil water content dependence parameter4
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0.010 (DIM) soil CH4 emission soil temperature dependence parameter1
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----------------------------------------------------------------------------------------
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SOIL PARAMETERS
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2 (m) depth of soil
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6 (mm) limit of first stage evaporation
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20.00 (mm) maximum height of pond water
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1 (dimless) curvature of soil stress function
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-9999 (dimless) measured runoff curve number (-9999: no measured data, model estimation)
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----------------------------------------------------------------------------------------
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SOIL COMPOSITION AND CHARACTERISTIC VALUES (-9999: no measured data)
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30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 (%) sand percentage by volume in rock-free soil
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50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 (%) silt percentage by volume in rock-free soil
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7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 (dimless) soil pH (dimless) measured runoff curve number
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-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (g/cm3) bulk density
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-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at saturation
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-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at field capacity
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-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at wilting point
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-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at hygroscopic water content
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-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (dimless) drainage coefficient
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-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (cm/day) hydraulic condictivity at saturation
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BIN
RBBGCMuso/inst/examples/hhs/muso.exe
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BIN
RBBGCMuso/inst/examples/hhs/muso.exe
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15
RBBGCMuso/inst/examples/hhs/parameters.csv
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RBBGCMuso/inst/examples/hhs/parameters.csv
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ABREVIATION,INDEX,min,max MuSo6
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TRANSFERGROWTHP,11,0.1,1
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T_BASE,13,0,8
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WPM,25,0,0.1
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CN_leaf,26,14.3,58.8
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CWIC,49,0.01,0.07
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CLEC,50,0.3,0.8
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FLNR,56,0.1,0.2
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MSTOMACOND,58,0.001,0.007
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ROOTDEPTH,64,0.5,3
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ROOTDISTRIB,65,0.2,5
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RELSWCCRIT1,96,0.97,1
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RELSWCCRIT2,97,0.4,1
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SENESCENCABG,101,0,0.1
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SLA,137.60,10,60
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