From 216f2109fe7f0d2b285725c5c9e10765a50e2609 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Roland=20Holl=C3=B3s?= Date: Fri, 16 Jun 2023 09:05:20 +0200 Subject: [PATCH] delete test.R file --- test.R | 382 --------------------------------------------------------- 1 file changed, 382 deletions(-) delete mode 100644 test.R diff --git a/test.R b/test.R deleted file mode 100644 index 88e85f5..0000000 --- a/test.R +++ /dev/null @@ -1,382 +0,0 @@ -parameters <- -getOption("RMuso_constMatrix")[["epc"]][["6"]] - NAME - yearday to start new growth - yearday to end new growth - transfer growth period as fraction of growing season - litterfall as fraction of growing season - base temperature - minimum temperature for growth displayed on current day - optimal1 temperature for growth displayed on current day - optimal2 temperature for growth displayed on current day - maxmimum temperature for growth displayed on current day - minimum temperature for carbon assimilation displayed on current day - optimal1 temperature for carbon assimilation displayed on current day - optimal2 temperature for carbon assimilation displayed on current day - maxmimum temperature for carbon assimilation displayed on current day - annual leaf and fine root turnover fraction - annual live wood turnover fraction - annual fire mortality fraction - whole-plant mortality paramter for vegetation period - C:N of leaves - C:N of leaf litter - C:N of fine roots - C:N of fruit - C:N of softstem - C:N of live wood - C:N of dead wood - dry matter content of leaves - dry matter content of leaf litter - dry matter content of fine roots - dry matter content of fruit - dry matter content of softstem - dry matter content of live wood - dry matter content of dead wood - leaf litter labile proportion - leaf litter cellulose proportion - fine root labile proportion - fine root cellulose proportion - fruit labile proportion - fruit cellulose proportion - softstem labile proportion - softstem cellulose proportion - dead wood cellulose proportion - canopy water interception coefficient - canopy light extinction coefficient - potential radiation use efficiency - radiation parameter1 (Jiang et al.2015) - radiation parameter1 (Jiang et al.2015) - all-sided to projected leaf area ratio - ratio of shaded SLA:sunlit SLA - fraction of leaf N in Rubisco - fraction of leaf N in PeP - maximum stomatal conductance - cuticular conductance - boundary layer conductance - maximum height of plant - stem weight corresponding to maximum height - plant height function shape parameter (slope) - maximum depth of rooting zone - root distribution parameter - root weight corresponding to max root depth - root depth function shape parameter (slope) - root weight to rooth length conversion factor - growth resp per unit of C grown - maintenance respiration in kgC/day per kg of tissue N - theoretical maximum prop. of non-structural and structural carbohydrates - prop. of non-structural carbohydrates available for maintanance resp - symbiotic+asymbiotic fixation of N - time delay for temperature in photosynthesis acclimation - critical VWCratio (prop. to FC-WP) in germination - critical photoslow daylength - slope of relative photoslow development rate - critical vernalization temperature 1 - critical vernalization temperature 2 - critical vernalization temperature 3 - critical vernalization temperature 4 - slope of relative vernalization development rate - required vernalization days (in vernalization development rate) - critical flowering heat stress temperature 1 - critical flowering heat stress temperature 2 - theoretical maximum of flowering thermal stress mortality - VWC ratio to calc. soil moisture limit 1 (prop. to FC-WP) - VWC ratio to calc. soil moisture limit 2 (prop. to SAT-FC) - minimum of soil moisture limit2 multiplicator (full anoxic stress value) - vapor pressure deficit: start of conductance reduction - vapor pressure deficit: complete conductance reduction - maximum senescence mortality coefficient of aboveground plant material - maximum senescence mortality coefficient of belowground plant material - maximum senescence mortality coefficient of non-structured plant material - lower limit extreme high temperature effect on senescence mortality - upper limit extreme high temperature effect on senescence mortality - turnover rate of wilted standing biomass to litter - turnover rate of cut-down non-woody biomass to litter - turnover rate of cut-down woody biomass to litter - drought tolerance parameter (critical value of day since water stress) - effect of soilstress factor on photosynthesis - crit. amount of snow limiting photosyn. - limit1 (under:full constrained) of HEATSUM index - limit2 (above:unconstrained) of HEATSUM index - limit1 (under:full constrained) of TMIN index - limit2 (above:unconstrained) of TMIN index - limit1 (above:full constrained) of VPD index - limit2 (under:unconstrained) of VPD index - limit1 (under:full constrained) of DAYLENGTH index - limit2 (above:unconstrained) of DAYLENGTH index - moving average (to avoid the effects of extreme events) - GSI limit1 (greater that limit -> start of vegper) - GSI limit2 (less that limit -> end of vegper) - length of phenophase (GDD)-0 - leaf ALLOCATION -0 - fine root ALLOCATION-0 - fruit ALLOCATION -0 - soft stem ALLOCATION-0 - live woody stem ALLOCATION -0 - dead woody stem ALLOCATION -0 - live coarse root ALLOCATION-0 - dead coarse root ALLOCATION -0 - canopy average specific leaf area-0 - current growth proportion-0 - maximal lifetime of plant tissue-0 - length of phenophase (GDD)-1 - leaf ALLOCATION -1 - fine root ALLOCATION-1 - fruit ALLOCATION -1 - soft stem ALLOCATION-1 - live woody stem ALLOCATION -1 - dead woody stem ALLOCATION -1 - live coarse root ALLOCATION-1 - dead coarse root ALLOCATION -1 - canopy average specific leaf area-1 - current growth proportion-1 - maximal lifetime of plant tissue-1 - length of phenophase (GDD)-2 - leaf ALLOCATION -2 - fine root ALLOCATION-2 - fruit ALLOCATION -2 - soft stem ALLOCATION-2 - live woody stem ALLOCATION -2 - dead woody stem ALLOCATION -2 - live coarse root ALLOCATION-2 - dead coarse root ALLOCATION -2 - canopy average specific leaf area-2 - current growth proportion-2 - maximal lifetime of plant tissue-2 - length of phenophase (GDD)-3 - leaf ALLOCATION -3 - fine root ALLOCATION-3 - fruit ALLOCATION -3 - soft stem ALLOCATION-3 - live woody stem ALLOCATION -3 - dead woody stem ALLOCATION -3 - live coarse root ALLOCATION-3 - dead coarse root ALLOCATION -3 - canopy average specific leaf area-3 - current growth proportion-3 - maximal lifetime of plant tissue-3 - length of phenophase (GDD)-4 - leaf ALLOCATION -4 - fine root ALLOCATION-4 - fruit ALLOCATION -4 - soft stem ALLOCATION-4 - live woody stem ALLOCATION -4 - dead woody stem ALLOCATION -4 - live coarse root ALLOCATION-4 - dead coarse root ALLOCATION -4 - canopy average specific leaf area-4 - current growth proportion-4 - maximal lifetime of plant tissue-4 - length of phenophase (GDD)-5 - leaf ALLOCATION -5 - fine root ALLOCATION-5 - fruit ALLOCATION -5 - soft stem ALLOCATION-5 - live woody stem ALLOCATION -5 - dead woody stem ALLOCATION -5 - live coarse root ALLOCATION-5 - dead coarse root ALLOCATION -5 - canopy average specific leaf area-5 - current growth proportion-5 - maximal lifetime of plant tissue-5 - length of phenophase (GDD)-6 - leaf ALLOCATION -6 - fine root ALLOCATION-6 - fruit ALLOCATION -6 - soft stem ALLOCATION-6 - live woody stem ALLOCATION -6 - dead woody stem ALLOCATION -6 - live coarse root ALLOCATION-6 - dead coarse root ALLOCATION -6 - canopy average specific leaf area-6 - current growth proportion-6 - maximal lifetime of plant tissue-6 - INDEX UNIT DEPENDENCE MIN MAX GROUP TYPE - 9.00 yday NA 0.00000 364.0000 0 0 - 10.00 yday NA 0.00000 364.0000 0 0 - 11.00 prop NA 0.00000 1.0000 0 0 - 12.00 prop NA 0.00000 1.0000 0 0 - 13.00 Celsius NA 0.00000 12.0000 0 0 - 14.00 Celsius 0 0.00000 10.0000 1 1 - 15.00 Celsius 1 10.00000 20.0000 1 1 - 16.00 Celsius 2 20.00000 40.0000 1 1 - 17.00 Celsius 3 30.00000 50.0000 1 1 - 18.00 Celsius 0 0.00000 10.0000 2 1 - 19.00 Celsius 1 10.00000 20.0000 2 1 - 20.00 Celsius 2 20.00000 40.0000 2 1 - 21.00 Celsius 3 30.00000 50.0000 2 1 - 22.00 1/yr NA 0.10000 0.4000 0 0 - 23.00 1/yr NA 0.50000 1.0000 0 0 - 24.00 1/yr NA 0.00000 1.0000 0 0 - 25.00 1/vegper NA 0.00000 0.5000 0 0 - 26.00 kgC/kgN 0 10.00000 100.0000 3 1 - 27.00 kgC/kgN 1 10.00000 60.0000 3 1 - 28.00 kgC/kgN 1 10.00000 60.0000 3 1 - 29.00 kgC/kgN 1 10.00000 60.0000 3 1 - 30.00 kgC/kgN 1 10.00000 60.0000 3 1 - 31.00 kgC/kgN 0 50.00000 100.0000 4 1 - 32.00 kgC/kgN 1 300.00000 800.0000 4 1 - 33.00 kgC/kgDM NA 0.20000 0.6000 0 0 - 34.00 kgC/kgDM NA 0.20000 0.6000 0 0 - 35.00 kgC/kgDM NA 0.20000 0.6000 0 0 - 36.00 kgC/kgDM NA 0.20000 0.6000 0 0 - 37.00 kgC/kgDM NA 0.20000 0.6000 0 0 - 38.00 kgC/kgDM NA 0.20000 0.6000 0 0 - 39.00 kgC/kgDM NA 0.20000 0.6000 0 0 - 40.00 prop 1 0.10000 0.6000 5 2 - 41.00 prop 1 0.10000 0.6000 5 2 - 42.00 prop 1 0.10000 0.6000 6 2 - 43.00 prop 1 0.10000 0.6000 6 2 - 44.00 prop 1 0.10000 0.6000 7 2 - 45.00 prop 1 0.10000 0.6000 7 2 - 46.00 prop 1 0.10000 0.6000 8 2 - 47.00 prop 1 0.10000 0.6000 8 2 - 48.00 prop NA 0.50000 0.9000 0 0 - 49.00 1/LAI/d NA 0.01000 0.1000 0 0 - 50.00 dimless NA 0.20000 0.8000 0 0 - 51.00 g/MJ NA 2.00000 2.0000 0 0 - 52.00 dimless NA 0.78100 0.7810 0 0 - 53.00 dimless NA -13.59600 -13.5960 0 0 - 54.00 dimless NA 2.00000 2.0000 0 0 - 55.00 dimless NA 2.00000 2.0000 0 0 - 56.00 dimless NA 0.01000 0.2000 0 0 - 57.00 dimless NA 0.04240 0.0424 0 0 - 58.00 m/s NA 0.00100 0.1000 0 0 - 59.00 m/s NA 0.00001 0.0001 0 0 - 60.00 m/s NA 0.01000 0.0900 0 0 - 61.00 m NA 0.10000 10.0000 0 0 - 62.00 kgC NA 0.10000 100.0000 0 0 - 63.00 dimless NA 0.50000 0.5000 0 0 - 64.00 m NA 0.10000 10.0000 0 0 - 65.00 prop NA 3.67000 3.6700 0 0 - 66.00 kgC/m2 NA 0.40000 0.4000 0 0 - 67.00 prop NA 0.50000 0.5000 0 0 - 68.00 m/kg NA 1000.00000 1000.0000 0 0 - 69.00 prop NA 0.10000 0.5000 0 0 - 70.00 kgC/kgN/d NA 0.10000 0.5000 0 0 - 71.00 dimless NA 0.00000 1.0000 0 0 - 72.00 dimless NA 0.00000 1.0000 0 0 - 73.00 kgN/m2/yr NA 0.00000 0.0010 0 0 - 74.00 day NA 0.00000 50.0000 0 0 - 79.00 prop NA 0.00000 1.0000 0 0 - 81.00 hour NA 14.00000 18.0000 0 0 - 82.00 dimless NA 0.00500 0.0050 0 0 - 84.00 Celsius 0 -5.00000 5.0000 9 1 - 85.00 Celsius 1 0.00000 10.0000 9 1 - 86.00 Celsius 2 5.00000 15.0000 9 1 - 87.00 Celsius 3 10.00000 20.0000 9 1 - 88.00 dimless NA 0.04000 0.0400 0 0 - 89.00 dimless NA 30.00000 70.0000 0 0 - 91.00 Celsius 0 30.00000 40.0000 10 1 - 92.00 Celsius 1 30.00000 50.0000 10 1 - 93.00 prop NA 0.00000 0.4000 0 0 - 96.00 prop NA 0.50000 1.0000 0 0 - 97.00 prop NA 0.50000 1.0000 0 0 - 98.00 prop NA 0.00000 1.0000 0 0 - 99.00 Pa NA 500.00000 1500.0000 0 0 -100.00 Pa NA 1500.00000 3500.0000 0 0 -101.00 prop 0 0.00000 0.1000 0 0 -102.00 prop 1 0.00000 0.1000 0 0 -103.00 prop NA 0.00000 0.1000 0 0 -104.00 Celsius NA 30.00000 40.0000 0 0 -105.00 Celsius NA 30.00000 50.0000 0 0 -106.00 prop NA 0.00000 0.1000 0 0 -107.00 prop NA 0.00000 0.1000 0 0 -108.00 prop NA 0.00000 0.1000 0 0 -109.00 n_day NA 0.00000 100.0000 0 0 -110.00 dimless NA 0.00000 1.0000 0 0 -113.00 kg/m2 NA 0.00000 20.0000 0 0 -114.00 Celsius 0 0.00000 50.0000 11 1 -115.00 Celsius 1 0.00000 100.0000 11 1 -116.00 Celsius 0 -5.00000 5.0000 12 1 -117.00 Celsius 1 0.00000 10.0000 12 1 -118.00 Pa 0 2000.00000 600.0000 13 1 -119.00 Pa 1 500.00000 1500.0000 13 1 -120.00 s 0 0.00000 0.0000 14 1 -121.00 s 1 0.00000 0.0000 14 1 -122.00 n_day NA 2.00000 20.0000 0 0 -123.00 dimless NA 0.00000 0.2000 0 0 -124.00 dimless NA 0.00000 0.1000 0 0 -128.60 Celsius NA 0.00000 10000.0000 0 0 -129.60 prop 1 0.00000 1.0000 15 -3 -130.60 prop 1 0.00000 1.0000 15 -3 -131.60 prop 1 0.00000 1.0000 15 -3 -132.60 prop 1 0.00000 1.0000 15 -3 -133.60 prop 1 0.00000 1.0000 15 -3 -134.60 prop 1 0.00000 1.0000 15 -3 -135.60 prop 1 0.00000 1.0000 15 -3 -136.60 prop 1 0.00000 1.0000 15 -3 -137.60 m2/kg NA 0.00000 2.0000 0 0 -138.60 prop NA 0.00000 0.0000 0 0 -139.60 Celsius NA 1.00000 20000.0000 0 0 -128.61 Celsius NA 0.00000 10000.0000 0 0 -129.61 prop 1 0.00000 1.0000 16 -3 -130.61 prop 1 0.00000 1.0000 16 -3 -131.61 prop 1 0.00000 1.0000 16 -3 -132.61 prop 1 0.00000 1.0000 16 -3 -133.61 prop 1 0.00000 1.0000 16 -3 -134.61 prop 1 0.00000 1.0000 16 -3 -135.61 prop 1 0.00000 1.0000 16 -3 -136.61 prop 1 0.00000 1.0000 16 -3 -137.61 m2/kg NA 0.00000 2.0000 0 0 -138.61 prop NA 0.00000 0.0000 0 0 -139.61 Celsius NA 1.00000 20000.0000 0 0 -128.62 Celsius NA 0.00000 10000.0000 0 0 -129.62 prop 1 0.00000 1.0000 17 -3 -130.62 prop 1 0.00000 1.0000 17 -3 -131.62 prop 1 0.00000 1.0000 17 -3 -132.62 prop 1 0.00000 1.0000 17 -3 -133.62 prop 1 0.00000 1.0000 17 -3 -134.62 prop 1 0.00000 1.0000 17 -3 -135.62 prop 1 0.00000 1.0000 17 -3 -136.62 prop 1 0.00000 1.0000 17 -3 -137.62 m2/kg NA 0.00000 2.0000 0 0 -138.62 prop NA 0.00000 0.0000 0 0 -139.62 Celsius NA 1.00000 20000.0000 0 0 -128.63 Celsius NA 0.00000 10000.0000 0 0 -129.63 prop 1 0.00000 1.0000 18 -3 -130.63 prop 1 0.00000 1.0000 18 -3 -131.63 prop 1 0.00000 1.0000 18 -3 -132.63 prop 1 0.00000 1.0000 18 -3 -133.63 prop 1 0.00000 1.0000 18 -3 -134.63 prop 1 0.00000 1.0000 18 -3 -135.63 prop 1 0.00000 1.0000 18 -3 -136.63 prop 1 0.00000 1.0000 18 -3 -137.63 m2/kg NA 0.00000 2.0000 0 0 -138.63 prop NA 0.00000 0.0000 0 0 -139.63 Celsius NA 1.00000 20000.0000 0 0 -128.64 Celsius NA 0.00000 10000.0000 0 0 -129.64 prop 1 0.00000 1.0000 19 -3 -130.64 prop 1 0.00000 1.0000 19 -3 -131.64 prop 1 0.00000 1.0000 19 -3 -132.64 prop 1 0.00000 1.0000 19 -3 -133.64 prop 1 0.00000 1.0000 19 -3 -134.64 prop 1 0.00000 1.0000 19 -3 -135.64 prop 1 0.00000 1.0000 19 -3 -136.64 prop 1 0.00000 1.0000 19 -3 -137.64 m2/kg NA 0.00000 2.0000 0 0 -138.64 prop NA 0.00000 0.0000 0 0 -139.64 Celsius NA 1.00000 20000.0000 0 0 -128.65 Celsius NA 0.00000 10000.0000 0 0 -129.65 prop 1 0.00000 1.0000 20 -3 -130.65 prop 1 0.00000 1.0000 20 -3 -131.65 prop 1 0.00000 1.0000 20 -3 -132.65 prop 1 0.00000 1.0000 20 -3 -133.65 prop 1 0.00000 1.0000 20 -3 -134.65 prop 1 0.00000 1.0000 20 -3 -135.65 prop 1 0.00000 1.0000 20 -3 -136.65 prop 1 0.00000 1.0000 20 -3 -137.65 m2/kg NA 0.00000 2.0000 0 0 -138.65 prop NA 0.00000 0.0000 0 0 -139.65 Celsius NA 1.00000 20000.0000 0 0 -128.66 Celsius NA 0.00000 10000.0000 0 0 -129.66 prop 1 0.00000 1.0000 21 -3 -130.66 prop 1 0.00000 1.0000 21 -3 -131.66 prop 1 0.00000 1.0000 21 -3 -132.66 prop 1 0.00000 1.0000 21 -3 -133.66 prop 1 0.00000 1.0000 21 -3 -134.66 prop 1 0.00000 1.0000 21 -3 -135.66 prop 1 0.00000 1.0000 21 -3 -136.66 prop 1 0.00000 1.0000 21 -3 -137.66 m2/kg NA 0.00000 2.0000 0 0 -138.66 prop NA 0.00000 0.0000 0 0 -139.66 Celsius NA 1.00000 20000.0000 0 0