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Now deep clean is realy deep :)

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This commit is contained in:
hollorol 2017-07-17 18:24:28 +02:00
parent 9913ff6bb9
commit 450aefe9d2
2 changed files with 39 additions and 31 deletions
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34
RBBGCMuso/R/cleanup.R
View File

@ -1,5 +1,5 @@
cleanupMuso <- function(location=NULL, simplicity=TRUE,deep=FALSE){
areThereAnyFolders <- FALSE
whereAmI <- getwd()
if(!is.null(location)){
setwd(location)
@ -10,40 +10,48 @@ cleanupMuso <- function(location=NULL, simplicity=TRUE,deep=FALSE){
setwd("LOG")
file.remove(
grep("(out$)|(endpoint$)|(log$)",
list.files(), value = T)
)}
list.files(), value = T))
areThereAnyFolders <- TRUE
}
if(dir.exists("../ERROR")){
setwd("../ERROR")
file.remove(
grep("(out$)|(endpoint$)|(log$)",
list.files(), value = T)
)}
list.files(), value = T))
areThereAnyFolders <- TRUE
}
if(dir.exists("../EPCS")){
setwd("../EPCS")
file.remove(
grep("(out$)|(endpoint$)|(log$)|(epc$)",
list.files(), value = T)
)}
list.files(), value = T))
areThereAnyFolder <- TRUE
}
if(dir.exists("../WRONGEPC")){
setwd("../WRONGEPC")
file.remove(
grep("(out$)|(endpoint$)|(log$)|(epc$)",
list.files(), value = T)
)}
list.files(), value = T))
areThereAnyFolders <- TRUE
}
if(areThereAnyFolders){
setwd("..")
file.remove(
grep("(out$)|(endpoint$)|(log$)",
list.files(), value = T)
)
list.files(), value = T))
} else {
file.remove(
grep("(out$)|(endpoint$)|(log$)",
list.files(), value = T))}
}
if(!simplicity){
file.remove(
grep("(out$)|(endpoint$)|(log$)",

10
RBBGCMuso/R/rungetMuso.R
View File

@ -10,7 +10,7 @@ rungetMuso <- function(settings, timee="d", debugging=FALSE, logfilename=NULL, k
#############################################################
############################spinup run############################
##########################################################
##########################################################
##Copy the variables from settings
inputloc <- settings$inputloc
@ -69,9 +69,9 @@ rungetMuso <- function(settings, timee="d", debugging=FALSE, logfilename=NULL, k
if(!spincrash){##If spinup did not crashed, run the normal run.
#####################################################################
###########################normal run#########################
#################################################################
#####################################################################
###########################normal run#########################
#################################################################
##for the sake of safe we set the location again
setwd(inputloc)
@ -120,7 +120,7 @@ rungetMuso <- function(settings, timee="d", debugging=FALSE, logfilename=NULL, k
}
}
##if errorsign is 1 there is error, if it is 0 everything ok
##if errorsign is 1 there is error, if it is 0 everything ok
if(length(perror)>sum(perror)){
errorsign <- 1
} else {