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Now deep clean is realy deep :)

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This commit is contained in:
hollorol 2017-07-17 18:24:28 +02:00
parent 9913ff6bb9
commit 450aefe9d2
2 changed files with 39 additions and 31 deletions
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42
RBBGCMuso/R/cleanup.R
View File

@ -1,5 +1,5 @@
cleanupMuso <- function(location=NULL, simplicity=TRUE,deep=FALSE){
areThereAnyFolders <- FALSE
whereAmI <- getwd()
if(!is.null(location)){
setwd(location)
@ -10,40 +10,48 @@ cleanupMuso <- function(location=NULL, simplicity=TRUE,deep=FALSE){
setwd("LOG")
file.remove(
grep("(out$)|(endpoint$)|(log$)",
list.files(), value = T)
)}
list.files(), value = T))
areThereAnyFolders <- TRUE
}
if(dir.exists("../ERROR")){
setwd("../ERROR")
file.remove(
grep("(out$)|(endpoint$)|(log$)",
list.files(), value = T)
)}
list.files(), value = T))
areThereAnyFolders <- TRUE
}
if(dir.exists("../EPCS")){
setwd("../EPCS")
file.remove(
grep("(out$)|(endpoint$)|(log$)|(epc$)",
list.files(), value = T)
)}
list.files(), value = T))
areThereAnyFolder <- TRUE
}
if(dir.exists("../WRONGEPC")){
setwd("../WRONGEPC")
file.remove(
grep("(out$)|(endpoint$)|(log$)|(epc$)",
list.files(), value = T)
)}
setwd("..")
file.remove(
grep("(out$)|(endpoint$)|(log$)",
list.files(), value = T)
)
list.files(), value = T))
areThereAnyFolders <- TRUE
}
if(areThereAnyFolders){
setwd("..")
file.remove(
grep("(out$)|(endpoint$)|(log$)",
list.files(), value = T))
} else {
file.remove(
grep("(out$)|(endpoint$)|(log$)",
list.files(), value = T))}
}
if(!simplicity){
file.remove(
grep("(out$)|(endpoint$)|(log$)",

28
RBBGCMuso/R/rungetMuso.R
View File

@ -10,7 +10,7 @@ rungetMuso <- function(settings, timee="d", debugging=FALSE, logfilename=NULL, k
#############################################################
############################spinup run############################
##########################################################
##########################################################
##Copy the variables from settings
inputloc <- settings$inputloc
@ -29,7 +29,7 @@ rungetMuso <- function(settings, timee="d", debugging=FALSE, logfilename=NULL, k
cat(" \n \n WARMING: there is a log or dayout file nearby the ini files, that may cause problemes. \n \n If you want to avoid that possible problemes, please copy the log or dayout files into a save place, and after do a cleanupMuso(), or delete these manually, or run the rungetMuso(), with the agressive=TRUE parameter \n \n")
}
}
if(aggressive==TRUE){
@ -47,10 +47,10 @@ rungetMuso <- function(settings, timee="d", debugging=FALSE, logfilename=NULL, k
if(silent){#silenc mode
if(Linuxp){
#In this case, in linux machines
#In this case, in linux machines
system(paste(executable,ininput[1],"> /dev/null",sep=" "))
} else {
#In windows machines there is a show.output.on.console option
#In windows machines there is a show.output.on.console option
system(paste(executable,ininput[1],sep=" "),show.output.on.console = FALSE)
}
@ -69,9 +69,9 @@ rungetMuso <- function(settings, timee="d", debugging=FALSE, logfilename=NULL, k
if(!spincrash){##If spinup did not crashed, run the normal run.
#####################################################################
###########################normal run#########################
#################################################################
#####################################################################
###########################normal run#########################
#################################################################
##for the sake of safe we set the location again
setwd(inputloc)
@ -107,7 +107,7 @@ rungetMuso <- function(settings, timee="d", debugging=FALSE, logfilename=NULL, k
perror<-as.numeric(as.vector(lapply(paste(outputloc,logfiles,sep="/"),function(x) tail(readLines(x,-1),1)))) #vector of spinup and normalrun error
if((debugging=="stamplog")|(debugging==TRUE)){#If debugging option turned on
#If log or ERROR directory does not exists create it!
#If log or ERROR directory does not exists create it!
dirName<-paste(inputloc,"LOG",sep="")
dirERROR<-paste(inputloc,"ERROR",sep="")
@ -120,7 +120,7 @@ rungetMuso <- function(settings, timee="d", debugging=FALSE, logfilename=NULL, k
}
}
##if errorsign is 1 there is error, if it is 0 everything ok
##if errorsign is 1 there is error, if it is 0 everything ok
if(length(perror)>sum(perror)){
errorsign <- 1
} else {
@ -196,9 +196,9 @@ rungetMuso <- function(settings, timee="d", debugging=FALSE, logfilename=NULL, k
if(leapYear){
Reva <- corrigMuso(settings,Reva)
rownames(Reva) <- musoDate(settings)
} else {
rownames(Reva) <- musoDate(settings, corrigated=FALSE)
rownames(Reva) <- musoDate(settings)
} else {
rownames(Reva) <- musoDate(settings, corrigated=FALSE)
}
if(export!=FALSE){
@ -208,8 +208,8 @@ rungetMuso <- function(settings, timee="d", debugging=FALSE, logfilename=NULL, k
## "csv"=(write.csv(Reva,export)),
## "xlsx"=(),
## "odt"=
## )
write.csv(Reva,export)