From 5e5949886cabcee04b391d83de74282dc0bd9212 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Zolt=C3=A1n=20BARCZA?= Date: Wed, 23 Jan 2019 13:37:16 +0100 Subject: [PATCH] Add files via upload --- RBBGCMuso/inst/examples/hhs/grass_normal.ini | 229 +++++++++++++++++++ 1 file changed, 229 insertions(+) create mode 100644 RBBGCMuso/inst/examples/hhs/grass_normal.ini diff --git a/RBBGCMuso/inst/examples/hhs/grass_normal.ini b/RBBGCMuso/inst/examples/hhs/grass_normal.ini new file mode 100644 index 0000000..68fdd6c --- /dev/null +++ b/RBBGCMuso/inst/examples/hhs/grass_normal.ini @@ -0,0 +1,229 @@ +BBGC_MuSo simulation (missing data: -9999) + +MET_INPUT +hhs_2013-2016.mtc43 (filename) met file name +4 (int) number of header lines in met file +365 (int) number of simdays in last simyear (truncated year: < 365) + +RESTART +1 (flag) 1 = read restart; 0 = dont read restart +0 (flag) 1 = write restart; 0 = dont write restart +0 (flag) 1 = use restart metyear; 0 = reset metyear +hhs.endpoint (filename) name of the input restart file +hhs.endpoint (filename) name of the output restart file + +TIME_DEFINE +4 (int) number of meteorological data years +4 (int) number of simulation years +2013 (int) first simulation year +0 (flag) 1 = spinup run; 0 = normal run +6000 (int) maximum number of spinup years + +CLIM_CHANGE +0.0 (degC) - offset for Tmax +0.0 (degC) - offset for Tmin +1.0 (degC) - multiplier for PRCP +1.0 (degC) - multiplier for VPD +1.0 (degC) - multiplier for RAD + +CO2_CONTROL +0 (flag) 0=constant; 1=vary with file +395.0 (ppm) constant atmospheric CO2 concentration +CO2_from2013.txt (filename) name of the CO2 file + +NDEP_CONTROL +0 (flag) 0=constant; 1=vary with file +0.001400 (kgN/m2/yr) wet+dry atmospheric deposition of N +Ndep_from2013.txt (filename) name of the N-dep file + +SITE +30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 (%) sand percentage by volume in rock-free soil +50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 (%) silt percentage by volume in rock-free soil +7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 (dimless) soil pH +248.0 (m) site elevation +46.95 (degrees) site latitude (- for S.Hem.) +0.20 (DIM) site shortwave albedo +9.00 (Celsius) mean annual air temperature +10.15 (Celsius) mean annual air temperature range +20.00 (mm) maximum height of pond water +-9999 (dimless) measured runoff curve number +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (g/cm3) bulk density +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at saturation +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at field capacity +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at wilting point +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at hygroscopic water content + +EPC_FILE +maize.epc (filename) EPC file name + +W_STATE +0.0 (kg/m2) water stored in snowpack +1.0 (DIM) initial soil water as a proportion of field capacity + +CN_STATE +0.001 (kgC/m2) first-year maximum leaf carbon +0.001 (kgC/m2) first-year maximum fine root carbon +0.001 (kgC/m2) first-year maximum fruit carbon +0.001 (kgC/m2) first-year maximum softstem carbon +0.001 (kgC/m2) first-year maximum live woody stem carbon +0.001 (kgC/m2) first-year maximum live coarse root carbon +0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) coarse woody debris carbon +0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) litter carbon, labile pool +0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) litter carbon, unshielded cellulose pool +0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) litter carbon, shielded cellulose pool +0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) litter carbon, lignin pool +0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) soil carbon, fast microbial recycling pool +0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) soil carbon, medium microbial recycling pool +0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) soil carbon, slow microbial recycling pool +0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) soil carbon, recalcitrant SOM (slowest) +0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgN/m2) litter nitrogen, labile pool +0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgN/m2) soil mineralized nitrogen, NH4 pool +0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgN/m2) soil mineralized nitrogen, NO3 pool + +OUTPUT_CONTROL +hegyhatsal (filename) output prefix +1 (flag) writing daily output (0 = no; 1 = binary; 2 = ascii) +0 (flag) writing monthly average of daily output (0 = no; 1 = binary; 2 = ascii) +0 (flag) writing annual average of daily output (0 = no; 1 = binary; 2 = ascii) +0 (flag) writing annual output (0 = no; 1 = binary; 2 = ascii) +1 (flag) for on-screen progress indicator + +DAILY_OUTPUT +39 number of daily output variables +49 1 tsoil[0] +171 2 evapotranspiration +159 3 soilw_evap +397 4 litr1c_total +398 5 litr2c_total +399 6 litr3c_total +400 7 litr4c_total +518 8 soil1c_total +519 9 soil2c_total +520 10 soil3c_total +521 11 soil4c_total +313 12 fruitc +552 13 HRV_transportC +2520 14 proj_lai +3017 15 total litterfall aboveground +3018 16 total litterfall belowground +2599 17 vwc[0] soilw layer1 first layer 0-2 cm +2600 18 vwc[1] the second 2-5 cm +2601 19 vwc[2] the third is at 5-10 cm +2602 20 vwc[3] the fourth is at 10-20 cm +2603 21 vwc[4] the fifth is at 20-50 cm +2604 22 vwc[5] the sixth is at 50-100 +407 23 standing dead biomass +3006 24 daily_npp +3005 25 daily_nep +3009 26 daily_gpp +3010 27 daily_mr +3011 28 daily_gr +3012 29 daily_hr +3051 30 litrc +3052 31 soilc +3037 32 cum_yieldC_HRV +74 33 GDD +1531 34 SUM of the soil mineral NH4 in the total soil [kgN/m2] +1532 35 SUM of the soil mineral NO3 in the total soil [kgN/m2] +3013 36 daily soil respiration +307 37 leafC +310 38 fine root C +316 39 soft stem C + +ANNUAL_OUTPUT +12 number of annual output variables +0 onday +1 offday +3000 annprcp +3001 anntavg +3002 annrunoff +2765 ytd_maxplai +3024 cum_nee +3033 cum_Closs_THN_w +3035 cum_Closs_MOW +3037 cum_yieldC_HRV +3059 NH4_top10 +3060 NO3_top10 + +------------------- +MANAGEMENT_SECTION +------------------- +PLANTING +1 (flag) do PLANTING? 0=no; 1=yes; filepath=reading from file +121 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) PLANTING day +0.05 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) germination depth +7 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(n/m2) number of seedlings +380 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(g/1000n) weight of 1000-seed +40 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) C content of seed +100 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) emergence rate + +THINNING +0 (flag) do THINNING? 0=no; 1=yes; filepath=reading from file +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) THINNING day +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(prop) thinning rate of woody plant material +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(prop) thinning rate of non-woody plant material +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) transported part of stem +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) transported part of leaf + +MOWING +0 (flag) do MOWING? 0=no; 1=yes; filepath=reading from file +0 (flag) mowing method? 0 - fixday method, 1 - fixvalue method +-9999 (m2/m2) fixed value of the LAI before MOWING (fixvalue method) +-9999 (m2/m2) fixed value of the LAI after MOWING (fixvalue method) +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) MOWING day +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m2/m2) value of the LAI after MOWING (fixday method) +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) transported part of plant material + +GRAZING +0 (flag) do GRAZING? 0=no, 1=yes; filepath=reading from file +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) first day of GRAZING +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) last day of GRAZING +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kg/LSU) weight equivalent of one unit +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(LSU/ha) animal stocking rate: Livestock Units per hectare +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kg dry matter/LSU) daily ingested dry matter +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(prop) trampling effect (standing dead biome to litter) +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) ratio of DM intake formed excrement +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) ratio of excrement returning to litter +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) carbon content of dry matter +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) N content of manure +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) C content of manure +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN2O-N:kgN) manure emission factor for direct N2O (T10.21) +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/1000 kg animal mass/day) default N excretion rate (T10.19) +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgCH4/LSU/yr*) manure emission factor for CH4 (T10.14) +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgCH4/LSU/yr*) fermentation emission factor for CH4 (T10.11) + +HARVESTING +0 (flag) do HARVESTING? 0=no; 1=yes; filepath=reading from file +275 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) HARVESTING day +0.03 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgC/m2) soft stem C content after HARVESTING +90 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) transported part of plant material + +PLOUGHING +0 (flag) do PLOUGHING? 0=no; 1=yes; filepath=reading from file +110 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) PLOUGHING day +0.3 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) PLOUGHING depth +0.1 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(prop) dissolving coefficient of ploughed biome to litter + +FERTILIZING +0 (flag) do FERTILIZING? 0=no; 1=yes; filepath=reading from file +90 140 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) FERTILIZING day +0.28 0.28 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) fertilizing depth +120. 30. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN fertilizer/ha/day) amount of fertilizer +100 100 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) dry matter content of fertilizer +0.5 0.5 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) nitrate content of fertilizer +0.5 0.5 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) ammonium content of fertilizer +0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) organic nitrogen content of fertilizer +0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgC/kg fertilizer) organic carbon content of fertilizer +0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) labile fraction of fertilizer +0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) unshielded cellulose fraction of fertilizer +0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) shielded cellulose fraction of fertilizer +0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) lignin fraction of fertilizer +0.01 0.01 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN2O-N:kgN) emission factor for N-additions + +IRRIGATION +0 (flag) do IRRIGATION? 0=no, 1=yes; filepath=reading from file +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) IRRIGATION day +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgH2O/m2/day) amount of water +-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) utilization coefficient of water + +END_INIT