From 65abbf0a52f454014f3f00a67570a4bf3e2402c2 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Zolt=C3=A1n=20BARCZA?= Date: Thu, 27 Feb 2020 10:05:59 +0100 Subject: [PATCH] Delete constMatrix.csv --- RBBGCMuso/inst/data/constMatrix.csv | 183 ---------------------------- 1 file changed, 183 deletions(-) delete mode 100644 RBBGCMuso/inst/data/constMatrix.csv diff --git a/RBBGCMuso/inst/data/constMatrix.csv b/RBBGCMuso/inst/data/constMatrix.csv deleted file mode 100644 index 8c52395..0000000 --- a/RBBGCMuso/inst/data/constMatrix.csv +++ /dev/null @@ -1,183 +0,0 @@ -"","X","NAME","INDEX","UNIT","MIN","MAX","GROUP","TYPE","DEPENDENCE" -"1",1,"yearday to start new growth",9,"yday",0,364,0,0,NA -"2",2,"yearday to end new growth",10,"yday",0,364,0,0,NA -"3",3,"transfer growth period as fraction of growing season",11,"prop",0,1,0,0,NA -"4",4,"litterfall as fraction of growing season",12,"prop",0,1,0,0,NA -"5",5,"base temperature",13,"Celsius",0,12,0,0,NA -"6",6,"minimum temperature for growth displayed on current day",14,"Celsius",0,10,1,1,0 -"7",7,"optimal1 temperature for growth displayed on current day",15,"Celsius",10,20,1,1,1 -"8",8,"optimal2 temperature for growth displayed on current day",16,"Celsius",20,40,1,1,2 -"9",9,"maxmimum temperature for growth displayed on current day",17,"Celsius",30,50,1,1,3 -"10",10,"minimum temperature for carbon assimilation displayed on current day",18,"Celsius",0,10,2,1,0 -"11",11,"optimal1 temperature for carbon assimilation displayed on current day",19,"Celsius",10,20,2,1,1 -"12",12,"optimal2 temperature for carbon assimilation displayed on current day",20,"Celsius",20,40,2,1,2 -"13",13,"maxmimum temperature for carbon assimilation displayed on current day",21,"Celsius",30,50,2,1,3 -"14",14,"annual leaf and fine root turnover fraction",22,"1/yr",0.1,0.4,0,0,NA -"15",15,"annual live wood turnover fraction",23,"1/yr",0.5,1,0,0,NA -"16",16,"annual fire mortality fraction",24,"1/yr",0,1,0,0,NA -"17",17,"whole-plant mortality paramter for vegetation period",25,"1/vegper",0,0.5,0,0,NA -"18",18,"C:N of leaves",26,"kgC/kgN",10,100,3,1,0 -"19",19,"C:N of leaf litter",27,"kgC/kgN",10,60,3,1,1 -"20",20,"C:N of fine roots",28,"kgC/kgN",10,60,3,1,1 -"21",21,"C:N of fruit",29,"kgC/kgN",10,60,3,1,1 -"22",22,"C:N of softstem",30,"kgC/kgN",10,60,3,1,1 -"23",23,"C:N of live wood",31,"kgC/kgN",50,100,4,1,0 -"24",24,"C:N of dead wood",32,"kgC/kgN",300,800,4,1,1 -"25",25,"dry matter content of leaves",33,"kgC/kgDM",0.2,0.6,0,0,NA -"26",26,"dry matter content of leaf litter",34,"kgC/kgDM",0.2,0.6,0,0,NA -"27",27,"dry matter content of fine roots",35,"kgC/kgDM",0.2,0.6,0,0,NA -"28",28,"dry matter content of fruit",36,"kgC/kgDM",0.2,0.6,0,0,NA -"29",29,"dry matter content of softstem",37,"kgC/kgDM",0.2,0.6,0,0,NA -"30",30,"dry matter content of live wood",38,"kgC/kgDM",0.2,0.6,0,0,NA -"31",31,"dry matter content of dead wood",39,"kgC/kgDM",0.2,0.6,0,0,NA -"32",32,"leaf litter labile proportion",40,"prop",0.1,0.6,5,2,1 -"33",33,"leaf litter cellulose proportion",41,"prop",0.1,0.6,5,2,1 -"34",34,"fine root labile proportion",42,"prop",0.1,0.6,6,2,1 -"35",35,"fine root cellulose proportion",43,"prop",0.1,0.6,6,2,1 -"36",36,"fruit labile proportion",44,"prop",0.1,0.6,7,2,1 -"37",37,"fruit cellulose proportion",45,"prop",0.1,0.6,7,2,1 -"38",38,"softstem labile proportion",46,"prop",0.1,0.6,8,2,1 -"39",39,"softstem cellulose proportion",47,"prop",0.1,0.6,8,2,1 -"40",40,"dead wood cellulose proportion",48,"prop",0.5,0.9,0,0,NA -"41",41,"canopy water interception coefficient",49,"1/LAI/d",0.01,0.1,0,0,NA -"42",42,"canopy light extinction coefficient",50,"dimless",0.2,0.8,0,0,NA -"43",43,"potential radiation use efficiency",51,"g/MJ",2,2,0,0,NA -"44",44,"radiation parameter1 (Jiang et al.2015)",52,"dimless",0.781,0.781,0,0,NA -"45",45,"radiation parameter1 (Jiang et al.2015)",53,"dimless",-13.596,-13.596,0,0,NA -"46",46,"all-sided to projected leaf area ratio",54,"dimless",2,2,0,0,NA -"47",47,"ratio of shaded SLA:sunlit SLA",55,"dimless",2,2,0,0,NA -"48",48,"fraction of leaf N in Rubisco",56,"dimless",0.01,0.2,0,0,NA -"49",49,"fraction of leaf N in PeP",57,"dimless",0.0424,0.0424,0,0,NA -"50",50,"maximum stomatal conductance ",58,"m/s",0.001,0.1,0,0,NA -"51",51,"cuticular conductance ",59,"m/s",1e-05,1e-04,0,0,NA -"52",52,"boundary layer conductance",60,"m/s",0.01,0.09,0,0,NA -"53",53,"maximum height of plant",61,"m",0.1,10,0,0,NA -"54",54,"stem weight corresponding to maximum height",62,"kgC",0.1,100,0,0,NA -"55",55,"plant height function shape parameter (slope)",63,"dimless",0.5,0.5,0,0,NA -"56",56,"maximum depth of rooting zone",64,"m",0.1,10,0,0,NA -"57",57,"root distribution parameter",65,"prop",3.67,3.67,0,0,NA -"58",58,"root weight corresponding to max root depth",66,"kgC/m2",0.4,0.4,0,0,NA -"59",59,"root depth function shape parameter (slope)",67,"prop",0.5,0.5,0,0,NA -"60",60,"root weight to rooth length conversion factor",68,"m/kg",1000,1000,0,0,NA -"61",61,"growth resp per unit of C grown",69,"prop",0.1,0.5,0,0,NA -"62",62,"maintenance respiration in kgC/day per kg of tissue N ",70,"kgC/kgN/d",0.1,0.5,0,0,NA -"63",63,"theoretical maximum prop. of non-structural and structural carbohydrates",71,"dimless",0,1,0,0,NA -"64",64,"prop. of non-structural carbohydrates available for maintanance resp",72,"dimless",0,1,0,0,NA -"65",65,"symbiotic+asymbiotic fixation of N",73,"kgN/m2/yr",0,0.001,0,0,NA -"66",66,"time delay for temperature in photosynthesis acclimation",74,"day",0,50,0,0,NA -"67",67,"critical VWCratio (prop. to FC-WP) in germination",79,"prop",0,1,0,0,NA -"68",68,"critical photoslow daylength",81,"hour",14,18,0,0,NA -"69",69,"slope of relative photoslow development rate ",82,"dimless",0.005,0.005,0,0,NA -"70",70,"critical vernalization temperature 1",84,"Celsius",-5,5,9,1,0 -"71",71,"critical vernalization temperature 2",85,"Celsius",0,10,9,1,1 -"72",72,"critical vernalization temperature 3",86,"Celsius",5,15,9,1,2 -"73",73,"critical vernalization temperature 4",87,"Celsius",10,20,9,1,3 -"74",74,"slope of relative vernalization development rate ",88,"dimless",0.04,0.04,0,0,NA -"75",75,"required vernalization days (in vernalization development rate)",89,"dimless",30,70,0,0,NA -"76",76,"critical flowering heat stress temperature 1",91,"Celsius",30,40,10,1,0 -"77",77,"critical flowering heat stress temperature 2",92,"Celsius",30,50,10,1,1 -"78",78,"theoretical maximum of flowering thermal stress mortality",93,"prop",0,0.4,0,0,NA -"79",79,"VWC ratio to calc. soil moisture limit 1 (prop. to FC-WP)",96,"prop",0.5,1,0,0,NA -"80",80,"VWC ratio to calc. soil moisture limit 2 (prop. to SAT-FC)",97,"prop",0.5,1,0,0,NA -"81",81,"minimum of soil moisture limit2 multiplicator (full anoxic stress value)",98,"prop",0,1,0,0,NA -"82",82,"vapor pressure deficit: start of conductance reduction",99,"Pa",500,1500,0,0,NA -"83",83,"vapor pressure deficit: complete conductance reduction",100,"Pa",1500,3500,0,0,NA -"84",84,"maximum senescence mortality coefficient of aboveground plant material",101,"prop",0,0.1,0,0,NA -"85",85,"maximum senescence mortality coefficient of belowground plant material",102,"prop",0,0.1,0,0,NA -"86",86,"maximum senescence mortality coefficient of non-structured plant material",103,"prop",0,0.1,0,0,NA -"87",87,"lower limit extreme high temperature effect on senescence mortality",104,"Celsius",30,40,0,0,NA -"88",88,"upper limit extreme high temperature effect on senescence mortality",105,"Celsius",30,50,0,0,NA -"89",89,"turnover rate of wilted standing biomass to litter",106,"prop",0,0.1,0,0,NA -"90",90,"turnover rate of cut-down non-woody biomass to litter",107,"prop",0,0.1,0,0,NA -"91",91,"turnover rate of cut-down woody biomass to litter",108,"prop",0,0.1,0,0,NA -"92",92,"drought tolerance parameter (critical value of day since water stress)",109,"n_day",0,100,0,0,NA -"93",93,"crit. amount of snow limiting photosyn.",112,"kg/m2",0,20,0,0,NA -"94",94,"limit1 (under:full constrained) of HEATSUM index",113,"Celsius",0,50,11,1,0 -"95",95,"limit2 (above:unconstrained) of HEATSUM index",114,"Celsius",0,100,11,1,1 -"96",96,"limit1 (under:full constrained) of TMIN index",115,"Celsius",-5,5,12,1,0 -"97",97,"limit2 (above:unconstrained) of TMIN index",116,"Celsius",0,10,12,1,1 -"98",98,"limit1 (above:full constrained) of VPD index",117,"Pa",2000,600,13,1,0 -"99",99,"limit2 (under:unconstrained) of VPD index",118,"Pa",500,1500,13,1,1 -"100",100,"limit1 (under:full constrained) of DAYLENGTH index",119,"s",0,0,14,1,0 -"101",101,"limit2 (above:unconstrained) of DAYLENGTH index",120,"s",0,0,14,1,1 -"102",102,"moving average (to avoid the effects of extreme events)",121,"n_day",2,20,0,0,NA -"103",103,"GSI limit1 (greater that limit -> start of vegper)",122,"dimless",0,0.2,0,0,NA -"104",104,"GSI limit2 (less that limit -> end of vegper)",123,"dimless",0,0.1,0,0,NA -"105",105,"length of phenophase (GDD)",127,"Celsius",0,10000,0,0,NA -"106",106,"leaf ALLOCATION -0",128.6,"prop",0,1,15,-3,1 -"107",107,"fine root ALLOCATION-0",129.6,"prop",0,1,15,-3,1 -"108",108,"fruit ALLOCATION -0",130.6,"prop",0,1,15,-3,1 -"109",109,"soft stem ALLOCATION-0",131.6,"prop",0,1,15,-3,1 -"110",110,"live woody stem ALLOCATION -0",132.6,"prop",0,1,15,-3,1 -"111",111,"dead woody stem ALLOCATION -0",133.6,"prop",0,1,15,-3,1 -"112",112,"live coarse root ALLOCATION-0",134.6,"prop",0,1,15,-3,1 -"113",113,"dead coarse root ALLOCATION -0",135.6,"prop",0,1,15,-3,1 -"114",114,"canopy average specific leaf area-0",136.6,"m2/kg",0,2,0,0,NA -"115",115,"current growth proportion-0",137.6,"prop",0,0,0,0,NA -"116",116,"maximal lifetime of plant tissue-0",138.6,"Celsius",1,20000,0,0,NA -"117",106,"leaf ALLOCATION -1",128.61,"prop",0,1,16,-3,1 -"118",107,"fine root ALLOCATION-1",129.61,"prop",0,1,16,-3,1 -"119",108,"fruit ALLOCATION -1",130.61,"prop",0,1,16,-3,1 -"120",109,"soft stem ALLOCATION-1",131.61,"prop",0,1,16,-3,1 -"121",110,"live woody stem ALLOCATION -1",132.61,"prop",0,1,16,-3,1 -"122",111,"dead woody stem ALLOCATION -1",133.61,"prop",0,1,16,-3,1 -"123",112,"live coarse root ALLOCATION-1",134.61,"prop",0,1,16,-3,1 -"124",113,"dead coarse root ALLOCATION -1",135.61,"prop",0,1,16,-3,1 -"125",114,"canopy average specific leaf area-1",136.61,"m2/kg",0,2,0,0,NA -"126",115,"current growth proportion-1",137.61,"prop",0,0,0,0,NA -"127",116,"maximal lifetime of plant tissue-1",138.61,"Celsius",1,20000,0,0,NA -"128",106,"leaf ALLOCATION -2",128.62,"prop",0,1,17,-3,1 -"129",107,"fine root ALLOCATION-2",129.62,"prop",0,1,17,-3,1 -"130",108,"fruit ALLOCATION -2",130.62,"prop",0,1,17,-3,1 -"131",109,"soft stem ALLOCATION-2",131.62,"prop",0,1,17,-3,1 -"132",110,"live woody stem ALLOCATION -2",132.62,"prop",0,1,17,-3,1 -"133",111,"dead woody stem ALLOCATION -2",133.62,"prop",0,1,17,-3,1 -"134",112,"live coarse root ALLOCATION-2",134.62,"prop",0,1,17,-3,1 -"135",113,"dead coarse root ALLOCATION -2",135.62,"prop",0,1,17,-3,1 -"136",114,"canopy average specific leaf area-2",136.62,"m2/kg",0,2,0,0,NA -"137",115,"current growth proportion-2",137.62,"prop",0,0,0,0,NA -"138",116,"maximal lifetime of plant tissue-2",138.62,"Celsius",1,20000,0,0,NA -"139",106,"leaf ALLOCATION -3",128.63,"prop",0,1,18,-3,1 -"140",107,"fine root ALLOCATION-3",129.63,"prop",0,1,18,-3,1 -"141",108,"fruit ALLOCATION -3",130.63,"prop",0,1,18,-3,1 -"142",109,"soft stem ALLOCATION-3",131.63,"prop",0,1,18,-3,1 -"143",110,"live woody stem ALLOCATION -3",132.63,"prop",0,1,18,-3,1 -"144",111,"dead woody stem ALLOCATION -3",133.63,"prop",0,1,18,-3,1 -"145",112,"live coarse root ALLOCATION-3",134.63,"prop",0,1,18,-3,1 -"146",113,"dead coarse root ALLOCATION -3",135.63,"prop",0,1,18,-3,1 -"147",114,"canopy average specific leaf area-3",136.63,"m2/kg",0,2,0,0,NA -"148",115,"current growth proportion-3",137.63,"prop",0,0,0,0,NA -"149",116,"maximal lifetime of plant tissue-3",138.63,"Celsius",1,20000,0,0,NA -"150",106,"leaf ALLOCATION -4",128.64,"prop",0,1,19,-3,1 -"151",107,"fine root ALLOCATION-4",129.64,"prop",0,1,19,-3,1 -"152",108,"fruit ALLOCATION -4",130.64,"prop",0,1,19,-3,1 -"153",109,"soft stem ALLOCATION-4",131.64,"prop",0,1,19,-3,1 -"154",110,"live woody stem ALLOCATION -4",132.64,"prop",0,1,19,-3,1 -"155",111,"dead woody stem ALLOCATION -4",133.64,"prop",0,1,19,-3,1 -"156",112,"live coarse root ALLOCATION-4",134.64,"prop",0,1,19,-3,1 -"157",113,"dead coarse root ALLOCATION -4",135.64,"prop",0,1,19,-3,1 -"158",114,"canopy average specific leaf area-4",136.64,"m2/kg",0,2,0,0,NA -"159",115,"current growth proportion-4",137.64,"prop",0,0,0,0,NA -"160",116,"maximal lifetime of plant tissue-4",138.64,"Celsius",1,20000,0,0,NA -"161",106,"leaf ALLOCATION -5",128.65,"prop",0,1,20,-3,1 -"162",107,"fine root ALLOCATION-5",129.65,"prop",0,1,20,-3,1 -"163",108,"fruit ALLOCATION -5",130.65,"prop",0,1,20,-3,1 -"164",109,"soft stem ALLOCATION-5",131.65,"prop",0,1,20,-3,1 -"165",110,"live woody stem ALLOCATION -5",132.65,"prop",0,1,20,-3,1 -"166",111,"dead woody stem ALLOCATION -5",133.65,"prop",0,1,20,-3,1 -"167",112,"live coarse root ALLOCATION-5",134.65,"prop",0,1,20,-3,1 -"168",113,"dead coarse root ALLOCATION -5",135.65,"prop",0,1,20,-3,1 -"169",114,"canopy average specific leaf area-5",136.65,"m2/kg",0,2,0,0,NA -"170",115,"current growth proportion-5",137.65,"prop",0,0,0,0,NA -"171",116,"maximal lifetime of plant tissue-5",138.65,"Celsius",1,20000,0,0,NA -"172",106,"leaf ALLOCATION -6",128.66,"prop",0,1,21,-3,1 -"173",107,"fine root ALLOCATION-6",129.66,"prop",0,1,21,-3,1 -"174",108,"fruit ALLOCATION -6",130.66,"prop",0,1,21,-3,1 -"175",109,"soft stem ALLOCATION-6",131.66,"prop",0,1,21,-3,1 -"176",110,"live woody stem ALLOCATION -6",132.66,"prop",0,1,21,-3,1 -"177",111,"dead woody stem ALLOCATION -6",133.66,"prop",0,1,21,-3,1 -"178",112,"live coarse root ALLOCATION-6",134.66,"prop",0,1,21,-3,1 -"179",113,"dead coarse root ALLOCATION -6",135.66,"prop",0,1,21,-3,1 -"180",114,"canopy average specific leaf area-6",136.66,"m2/kg",0,2,0,0,NA -"181",115,"current growth proportion-6",137.66,"prop",0,0,0,0,NA -"182",116,"maximal lifetime of plant tissue-6",138.66,"Celsius",1,20000,0,0,NA