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updating files needed to support Biome-BGCMuSo version 7

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This commit is contained in:
Zoltan BARCZA 2023-02-07 09:57:48 +01:00
parent 06dbb4fdf0
commit 8140966e0e
4 changed files with 10 additions and 6 deletions
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5
RBBGCMuso/DESCRIPTION
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@ -22,6 +22,10 @@ Imports:
rmarkdown,
tibble,
tidyr,
glue,
openxlsx,
jsonlite,
scales,
tcltk,
digest,
jsonlite,
@ -37,7 +41,6 @@ Imports:
rpart,
rpart.plot
Maintainer: Roland Hollo's <hollorol@gmail.com>
RoxygenNote: 7.1.0
Suggests: knitr,
rmarkdown,
VignetteBuilder: knitr

5
RBBGCMuso/R/atStart.R
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@ -1,6 +1,7 @@
.onLoad <- function(libname,pkgname){
print("This is RBBGCMuso version 0.7")
RMuso_version <- 6
RMuso_version <- 7
cat(sprintf("This is RBBGCMuso version 1.0\nDefault Biome-BGCMuSo version: %d",
RMuso_version))
RMuso_constMatrix <- list(epc=NULL,soil=NULL)
RMuso_varTable <- list()
#___________________________

4
RBBGCMuso/R/outputMapping.R
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@ -1,8 +1,8 @@
#' updateMusoMapping
#'
#' This function updates the Biome-BGCMuSo output code-variable matrix (creates a json file that is used internally by RBBGCMuso). Within Biome-BGCMuSo the output state variablesare marked by integer numbers (see the User's Guide). In order to provide meaningful variable names (e.g. 3009 means Gross Primary Production) a conversion table is needed which is handled by this function. The input Excel file must have the following column order: name, index, units, description (plus other optional columns line group). name refers to the abbreviation of the variable; index is the integer number of the output variable; unit is the unit of the variable; description is a meaningful text to explain the variable. The script will NOT work with other column order!
#' This function updates the Biome-BGCMuSo output code-variable matrix (creates a json file that is used internally by RBBGCMuso). Within Biome-BGCMuSo the output state variables are marked by integer numbers (see the User's Guide). In order to provide meaningful variable names (e.g. 3009 means Gross Primary Production) a conversion table is needed which is handled by this function. The input Excel file must have the following column order: name, index, units, description (plus other optional columns line group). name refers to the abbreviation of the variable; index is the integer number of the output variable; unit is the unit of the variable; description is a meaningful text to explain the variable. The script will NOT work with other column order!
#' @author Roland HOLLOS
#' @param excelName Name of the excelfile which contains the parameters
#' @param excelName Name of the Excel file which contains the parameters
#' @importFrom openxlsx read.xlsx
#' @importFrom jsonlite write_json
#' @return The output code-variable matrix, and also the function changes the global variable

2
RBBGCMuso/R/setupMuso.R
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@ -16,7 +16,7 @@
#' @param grazInput Via the grazInput parameter, the user can specify the location of the file that contains the grazing information. By default the package reads this information from the INI files.
#' @param harvInput Via the harvInput parameter, the user can specify the location of the file that contains the harvesting information. By default the package reads this information from the INI files.
#' @param plougInput Via the plougInput parameter, the user can specify the location of the file that contains the ploughing information. By default the package reads this information from the INI files.
#' @param fertInput Via the fertInput parameter, ythe user can specify the location of the file that contains the fertilizing information. By default the package reads this information from the INI files.
#' @param fertInput Via the fertInput parameter, the user can specify the location of the file that contains the fertilizing information. By default the package reads this information from the INI files.
#' @param irrInput Via the irrInput parameter, the user can specify the location of the file that contains the irrigation information. By default the package reads this information from the INI files.
#' @param nitInput Via the nitInput parameter, the user can specify the location of the file that contains the nitrogen deposition data. By default the package reads this information from the INI files.
#' @param iniInput Via the iniInput parameter, the user can specify the location of the INI files. By default the package reads the INI files from the working directory.