From 9ba1c7a7a8e38915b3463b9c29101c564e83f988 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Barcza=20Zolt=C3=A1n?= Date: Wed, 23 Jan 2019 11:22:42 +0100 Subject: [PATCH] update on examples --- RBBGCMuso/inst/examples/hhs/n.ini | 84 +++++++++--------- .../hhs/{normal_gyep.ini => normal_grass.ini} | 86 +++++++++---------- RBBGCMuso/inst/examples/hhs/s.ini | 18 ++-- RBBGCMuso/inst/examples/hhs/sensitivity.csv | 16 ---- 4 files changed, 94 insertions(+), 110 deletions(-) rename RBBGCMuso/inst/examples/hhs/{normal_gyep.ini => normal_grass.ini} (88%) delete mode 100644 RBBGCMuso/inst/examples/hhs/sensitivity.csv diff --git a/RBBGCMuso/inst/examples/hhs/n.ini b/RBBGCMuso/inst/examples/hhs/n.ini index b7f5072..266463a 100644 --- a/RBBGCMuso/inst/examples/hhs/n.ini +++ b/RBBGCMuso/inst/examples/hhs/n.ini @@ -1,7 +1,7 @@ BBGC_MuSo simulation (missing data: -9999) MET_INPUT -hhs_2013-2016.mtc43 (filename) met file name +hhs_2013-2016.mtc43 (filename) met file name 4 (int) number of header lines in met file 365 (int) number of simdays in last simyear (truncated year: < 365) @@ -9,12 +9,12 @@ RESTART 1 (flag) 1 = read restart; 0 = dont read restart 0 (flag) 1 = write restart; 0 = dont write restart 0 (flag) 1 = use restart metyear; 0 = reset metyear -hhs.endpoint (filename) name of the input restart file -hhs.endpoint (filename) name of the output restart file +hhs.endpoint (filename) name of the input restart file +hhs.endpoint (filename) name of the output restart file TIME_DEFINE 4 (int) number of meteorological data years -4 (int) number of simulation years +4 (int) number of simulation years 2013 (int) first simulation year 0 (flag) 1 = spinup run; 0 = normal run 6000 (int) maximum number of spinup years @@ -29,17 +29,17 @@ CLIM_CHANGE CO2_CONTROL 0 (flag) 0=constant; 1=vary with file 395.0 (ppm) constant atmospheric CO2 concentration -CO2_from2013.txt (filename) name of the CO2 file +CO2_from2013.txt (filename) name of the CO2 file NDEP_CONTROL 0 (flag) 0=constant; 1=vary with file 0.001400 (kgN/m2/yr) wet+dry atmospheric deposition of N -Ndep_from2013.txt (filename) name of the N-dep file +Ndep_from2013.txt (filename) name of the N-dep file SITE 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 (%) sand percentage by volume in rock-free soil 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 (%) silt percentage by volume in rock-free soil -7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 (dimless) soil pH +7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 (dimless) soil pH 248.0 (m) site elevation 46.95 (degrees) site latitude (- for S.Hem.) 0.20 (DIM) site shortwave albedo @@ -54,7 +54,7 @@ SITE -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at hygroscopic water content EPC_FILE -maize.epc (filename) EPC file name +maize.epc (filename) EPC file name W_STATE 0.0 (kg/m2) water stored in snowpack @@ -81,7 +81,7 @@ CN_STATE 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgN/m2) soil mineralized nitrogen, NO3 pool OUTPUT_CONTROL -hegyhatsal (filename) output prefix +hegyhatsal (filename) output prefix 1 (flag) writing daily output (0 = no; 1 = binary; 2 = ascii) 0 (flag) writing monthly average of daily output (0 = no; 1 = binary; 2 = ascii) 0 (flag) writing annual average of daily output (0 = no; 1 = binary; 2 = ascii) @@ -90,28 +90,28 @@ hegyhatsal DAILY_OUTPUT 39 number of daily output variables -49 0 tsoil[0] -171 1 evapotranspiration -159 2 soilw_evap -397 3 litr1c_total -398 4 litr2c_total -399 5 litr3c_total -400 6 litr4c_total -518 7 soil1c_total -519 8 soil2c_total -520 9 soil3c_total -521 10 soil4c_total -313 11 fruitc +49 1 tsoil[0] +171 2 evapotranspiration +159 3 soilw_evap +397 4 litr1c_total +398 5 litr2c_total +399 6 litr3c_total +400 7 litr4c_total +518 8 soil1c_total +519 9 soil2c_total +520 10 soil3c_total +521 11 soil4c_total +313 12 fruitc 552 13 HRV_transportC 2520 14 proj_lai 3017 15 total litterfall aboveground 3018 16 total litterfall belowground -2599 17 vwc[0] =soilw layer1 first layer 0-2 cm -2600 18 vwc[1] the second 2-5 cm -2601 19 vwc[2] the third is at 5-10 cm -2602 20 vwc[3] the fourth is at 10-20 cm -2603 21 vwc[4] the fifth is at 20-50 cm -2604 22 vwc[5] the sixth is at 50-100 +2599 17 vwc[0] soilw layer1 first layer 0-2 cm +2600 18 vwc[1] the second 2-5 cm +2601 19 vwc[2] the third is at 5-10 cm +2602 20 vwc[3] the fourth is at 10-20 cm +2603 21 vwc[4] the fifth is at 20-50 cm +2604 22 vwc[5] the sixth is at 50-100 407 23 standing dead biomass 3006 24 daily_npp; 3005 25 daily_nep @@ -121,12 +121,12 @@ DAILY_OUTPUT 3012 29 daily_hr 3051 30 litrc 3052 31 soilc -3037 32 cum_yieldC_HRV (kgC/m2) +3037 32 cum_yieldC_HRV (kgC/m2) 74 33 GDD 1531 34 SUM of the soil mineral NH4 in the total soil [kgN/m2] 1532 35 SUM of the soil mineral NO3 in the total soil [kgN/m2] 3013 36 daily soil respiration -307 37 leafC -----------------new +307 37 leafC 310 38 fine root C 316 39 soft stem C @@ -149,13 +149,13 @@ ANNUAL_OUTPUT MANAGEMENT_SECTION ------------------- PLANTING -1 (flag) do PLANTING? 0=no; 1=yes; filepath=reading from file +1 (flag) do PLANTING? 0=no; 1=yes; filepath=reading from file 121 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) PLANTING day 0.05 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) germination depth 7 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(n/m2) number of seedlings 380 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(g/1000n) weight of 1000-seed 40 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) C content of seed -100 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) emergence rate +100 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) emergence rate THINNING 0 (flag) do THINNING? 0=no; 1=yes; filepath=reading from file @@ -194,30 +194,30 @@ GRAZING HARVESTING 1 (flag) do HARVESTING? 0=no; 1=yes; filepath=reading from file -275 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) HARVESTING day -0.03 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgC/m2) soft stem C content after HARVESTING -90 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) transported part of plant material +275 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) HARVESTING day +0.03 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgC/m2) soft stem C content after HARVESTING +90 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) transported part of plant material PLOUGHING 1 (flag) do PLOUGHING? 0=no; 1=yes; filepath=reading from file -110 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) PLOUGHING day -0.3 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) PLOUGHING depth -0.1 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(prop) dissolving coefficient of ploughed biome to litter +110 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) PLOUGHING day +0.3 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) PLOUGHING depth +0.1 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(prop) dissolving coefficient of ploughed biome to litter FERTILIZING 1 (flag) do FERTILIZING? 0=no; 1=yes; filepath=reading from file 90 140 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) FERTILIZING day 0.28 0.28 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) fertilizing depth -120. 30. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN fertilizer/ha/day) amount of fertilizer +120. 30. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN fertilizer/ha/day) amount of fertilizer 100 100 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) dry matter content of fertilizer 0.5 0.5 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) nitrate content of fertilizer 0.5 0.5 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) ammonium content of fertilizer 0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) organic nitrogen content of fertilizer 0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgC/kg fertilizer) organic carbon content of fertilizer -0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) labile fraction of fertilizer -0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) unshielded cellulose fraction of fertilizer -0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) shielded cellulose fraction of fertilizer -0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) lignin fraction of fertilizer +0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) labile fraction of fertilizer +0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) unshielded cellulose fraction of fertilizer +0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) shielded cellulose fraction of fertilizer +0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) lignin fraction of fertilizer 0.01 0.01 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN2O-N:kgN) emission factor for N-additions IRRIGATION diff --git a/RBBGCMuso/inst/examples/hhs/normal_gyep.ini b/RBBGCMuso/inst/examples/hhs/normal_grass.ini similarity index 88% rename from RBBGCMuso/inst/examples/hhs/normal_gyep.ini rename to RBBGCMuso/inst/examples/hhs/normal_grass.ini index fe3d61d..68fdd6c 100644 --- a/RBBGCMuso/inst/examples/hhs/normal_gyep.ini +++ b/RBBGCMuso/inst/examples/hhs/normal_grass.ini @@ -1,7 +1,7 @@ BBGC_MuSo simulation (missing data: -9999) MET_INPUT -hhs_2013-2016.mtc43 (filename) met file name +hhs_2013-2016.mtc43 (filename) met file name 4 (int) number of header lines in met file 365 (int) number of simdays in last simyear (truncated year: < 365) @@ -9,12 +9,12 @@ RESTART 1 (flag) 1 = read restart; 0 = dont read restart 0 (flag) 1 = write restart; 0 = dont write restart 0 (flag) 1 = use restart metyear; 0 = reset metyear -hhs.endpoint (filename) name of the input restart file -hhs.endpoint (filename) name of the output restart file +hhs.endpoint (filename) name of the input restart file +hhs.endpoint (filename) name of the output restart file TIME_DEFINE 4 (int) number of meteorological data years -4 (int) number of simulation years +4 (int) number of simulation years 2013 (int) first simulation year 0 (flag) 1 = spinup run; 0 = normal run 6000 (int) maximum number of spinup years @@ -29,17 +29,17 @@ CLIM_CHANGE CO2_CONTROL 0 (flag) 0=constant; 1=vary with file 395.0 (ppm) constant atmospheric CO2 concentration -CO2_from2013.txt (filename) name of the CO2 file +CO2_from2013.txt (filename) name of the CO2 file NDEP_CONTROL 0 (flag) 0=constant; 1=vary with file 0.001400 (kgN/m2/yr) wet+dry atmospheric deposition of N -Ndep_from2013.txt (filename) name of the N-dep file +Ndep_from2013.txt (filename) name of the N-dep file SITE 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 (%) sand percentage by volume in rock-free soil 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 (%) silt percentage by volume in rock-free soil -7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 (dimless) soil pH +7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 (dimless) soil pH 248.0 (m) site elevation 46.95 (degrees) site latitude (- for S.Hem.) 0.20 (DIM) site shortwave albedo @@ -54,7 +54,7 @@ SITE -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at hygroscopic water content EPC_FILE -maize.epc (filename) EPC file name +maize.epc (filename) EPC file name W_STATE 0.0 (kg/m2) water stored in snowpack @@ -81,7 +81,7 @@ CN_STATE 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgN/m2) soil mineralized nitrogen, NO3 pool OUTPUT_CONTROL -hegyhatsal (filename) output prefix +hegyhatsal (filename) output prefix 1 (flag) writing daily output (0 = no; 1 = binary; 2 = ascii) 0 (flag) writing monthly average of daily output (0 = no; 1 = binary; 2 = ascii) 0 (flag) writing annual average of daily output (0 = no; 1 = binary; 2 = ascii) @@ -90,30 +90,30 @@ hegyhatsal DAILY_OUTPUT 39 number of daily output variables -49 0 tsoil[0] -171 1 evapotranspiration -159 2 soilw_evap -397 3 litr1c_total -398 4 litr2c_total -399 5 litr3c_total -400 6 litr4c_total -518 7 soil1c_total -519 8 soil2c_total -520 9 soil3c_total -521 10 soil4c_total -313 11 fruitc +49 1 tsoil[0] +171 2 evapotranspiration +159 3 soilw_evap +397 4 litr1c_total +398 5 litr2c_total +399 6 litr3c_total +400 7 litr4c_total +518 8 soil1c_total +519 9 soil2c_total +520 10 soil3c_total +521 11 soil4c_total +313 12 fruitc 552 13 HRV_transportC 2520 14 proj_lai 3017 15 total litterfall aboveground 3018 16 total litterfall belowground -2599 17 vwc[0] =soilw layer1 first layer 0-2 cm -2600 18 vwc[1] the second 2-5 cm -2601 19 vwc[2] the third is at 5-10 cm -2602 20 vwc[3] the fourth is at 10-20 cm -2603 21 vwc[4] the fifth is at 20-50 cm -2604 22 vwc[5] the sixth is at 50-100 +2599 17 vwc[0] soilw layer1 first layer 0-2 cm +2600 18 vwc[1] the second 2-5 cm +2601 19 vwc[2] the third is at 5-10 cm +2602 20 vwc[3] the fourth is at 10-20 cm +2603 21 vwc[4] the fifth is at 20-50 cm +2604 22 vwc[5] the sixth is at 50-100 407 23 standing dead biomass -3006 24 daily_npp; +3006 24 daily_npp 3005 25 daily_nep 3009 26 daily_gpp 3010 27 daily_mr @@ -121,12 +121,12 @@ DAILY_OUTPUT 3012 29 daily_hr 3051 30 litrc 3052 31 soilc -3037 32 cum_yieldC_HRV (kgC/m2) +3037 32 cum_yieldC_HRV 74 33 GDD 1531 34 SUM of the soil mineral NH4 in the total soil [kgN/m2] 1532 35 SUM of the soil mineral NO3 in the total soil [kgN/m2] 3013 36 daily soil respiration -307 37 leafC -----------------new +307 37 leafC 310 38 fine root C 316 39 soft stem C @@ -149,13 +149,13 @@ ANNUAL_OUTPUT MANAGEMENT_SECTION ------------------- PLANTING -1 (flag) do PLANTING? 0=no; 1=yes; filepath=reading from file +1 (flag) do PLANTING? 0=no; 1=yes; filepath=reading from file 121 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) PLANTING day 0.05 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) germination depth 7 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(n/m2) number of seedlings 380 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(g/1000n) weight of 1000-seed 40 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) C content of seed -100 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) emergence rate +100 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) emergence rate THINNING 0 (flag) do THINNING? 0=no; 1=yes; filepath=reading from file @@ -194,30 +194,30 @@ GRAZING HARVESTING 0 (flag) do HARVESTING? 0=no; 1=yes; filepath=reading from file -275 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) HARVESTING day -0.03 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgC/m2) soft stem C content after HARVESTING -90 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) transported part of plant material +275 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) HARVESTING day +0.03 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgC/m2) soft stem C content after HARVESTING +90 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) transported part of plant material PLOUGHING 0 (flag) do PLOUGHING? 0=no; 1=yes; filepath=reading from file -110 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) PLOUGHING day -0.3 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) PLOUGHING depth -0.1 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(prop) dissolving coefficient of ploughed biome to litter +110 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) PLOUGHING day +0.3 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) PLOUGHING depth +0.1 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(prop) dissolving coefficient of ploughed biome to litter FERTILIZING 0 (flag) do FERTILIZING? 0=no; 1=yes; filepath=reading from file 90 140 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) FERTILIZING day 0.28 0.28 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) fertilizing depth -120. 30. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN fertilizer/ha/day) amount of fertilizer +120. 30. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN fertilizer/ha/day) amount of fertilizer 100 100 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) dry matter content of fertilizer 0.5 0.5 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) nitrate content of fertilizer 0.5 0.5 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) ammonium content of fertilizer 0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) organic nitrogen content of fertilizer 0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgC/kg fertilizer) organic carbon content of fertilizer -0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) labile fraction of fertilizer -0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) unshielded cellulose fraction of fertilizer -0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) shielded cellulose fraction of fertilizer -0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) lignin fraction of fertilizer +0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) labile fraction of fertilizer +0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) unshielded cellulose fraction of fertilizer +0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) shielded cellulose fraction of fertilizer +0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) lignin fraction of fertilizer 0.01 0.01 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN2O-N:kgN) emission factor for N-additions IRRIGATION diff --git a/RBBGCMuso/inst/examples/hhs/s.ini b/RBBGCMuso/inst/examples/hhs/s.ini index 71b055f..dd04636 100644 --- a/RBBGCMuso/inst/examples/hhs/s.ini +++ b/RBBGCMuso/inst/examples/hhs/s.ini @@ -1,7 +1,7 @@ BBGC_MuSo simulation (missing data: -9999) MET_INPUT -hhs_1961-2014.mtc43 (filename) met file name +hhs_1961-2014.mtc43 (filename) met file name 4 (int) number of header lines in met file 365 (int) number of simdays in last simyear (truncated year: < 365) @@ -9,12 +9,12 @@ RESTART 0 (flag) 1 = read restart; 0 = dont read restart 1 (flag) 1 = write restart; 0 = dont write restart 0 (flag) 1 = use restart metyear; 0 = reset metyear -hhs.endpoint (filename) name of the input restart file -hhs.endpoint (filename) name of the output restart file +hhs.endpoint (filename) name of the input restart file +hhs.endpoint (filename) name of the output restart file TIME_DEFINE 54 (int) number of meteorological data years -54 (int) number of simulation years +54 (int) number of simulation years 1961 (int) first simulation year 1 (flag) 1 = spinup run; 0 = normal run 6000 (int) maximum number of spinup years @@ -29,17 +29,17 @@ CLIM_CHANGE CO2_CONTROL 0 (flag) 0=constant; 1=vary with file 290.0 (ppm) constant atmospheric CO2 concentration -CO2_from1961.txt (filename) name of the CO2 file +CO2_from1961.txt (filename) name of the CO2 file NDEP_CONTROL 0 (flag) 0=constant; 1=vary with file 0.000200 (kgN/m2/yr) wet+dry atmospheric deposition of N -Ndep_from1961.txt (filename) name of the N-dep file +Ndep_from1961.txt (filename) name of the N-dep file SITE 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 (%) sand percentage by volume in rock-free soil 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 (%) silt percentage by volume in rock-free soil -7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 (dimless) soil pH +7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 (dimless) soil pH 248.0 (m) site elevation 46.95 (degrees) site latitude (- for S.Hem.) 0.20 (DIM) site shortwave albedo @@ -54,7 +54,7 @@ SITE -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at hygroscopic water content EPC_FILE -c3grass.epc (filename) EPC file name +c3grass.epc (filename) EPC file name W_STATE 0.0 (kg/m2) water stored in snowpack @@ -81,7 +81,7 @@ CN_STATE 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgN/m2) soil mineralized nitrogen, NO3 pool OUTPUT_CONTROL -spinup_ (filename) output prefix +spinup_ (filename) output prefix 0 (flag) writing daily output (0 = no; 1 = binary; 2 = ascii) 0 (flag) writing monthly average of daily output (0 = no; 1 = binary; 2 = ascii) 0 (flag) writing annual average of daily output (0 = no; 1 = binary; 2 = ascii) diff --git a/RBBGCMuso/inst/examples/hhs/sensitivity.csv b/RBBGCMuso/inst/examples/hhs/sensitivity.csv deleted file mode 100644 index 24469ca..0000000 --- a/RBBGCMuso/inst/examples/hhs/sensitivity.csv +++ /dev/null @@ -1,16 +0,0 @@ -"","x" -"BASETEMP",1.33 -"WPM",0.18 -"CN_lv",0.67 -"CN_li",5.72 -"CN_root",0.34 -"CN_fruit",0.13 -"CN_stem",0.59 -"CLEC",4.67 -"FLNR",26.17 -"STOMA",0.79 -"ROOTDEPTH",18.98 -"SWCGERMIN",0.01 -"MAXLIFETIME",0.09 -"NH4MOBILEPROP",0.33 -"keles",39.99