diff --git a/RBBGCMuso/inst/examples/hhs/s.ini b/RBBGCMuso/inst/examples/hhs/s.ini deleted file mode 100644 index dd04636..0000000 --- a/RBBGCMuso/inst/examples/hhs/s.ini +++ /dev/null @@ -1,204 +0,0 @@ -BBGC_MuSo simulation (missing data: -9999) - -MET_INPUT -hhs_1961-2014.mtc43 (filename) met file name -4 (int) number of header lines in met file -365 (int) number of simdays in last simyear (truncated year: < 365) - -RESTART -0 (flag) 1 = read restart; 0 = dont read restart -1 (flag) 1 = write restart; 0 = dont write restart -0 (flag) 1 = use restart metyear; 0 = reset metyear -hhs.endpoint (filename) name of the input restart file -hhs.endpoint (filename) name of the output restart file - -TIME_DEFINE -54 (int) number of meteorological data years -54 (int) number of simulation years -1961 (int) first simulation year -1 (flag) 1 = spinup run; 0 = normal run -6000 (int) maximum number of spinup years - -CLIM_CHANGE -0.0 (degC) - offset for Tmax -0.0 (degC) - offset for Tmin -1.0 (degC) - multiplier for PRCP -1.0 (degC) - multiplier for VPD -1.0 (degC) - multiplier for RAD - -CO2_CONTROL -0 (flag) 0=constant; 1=vary with file -290.0 (ppm) constant atmospheric CO2 concentration -CO2_from1961.txt (filename) name of the CO2 file - -NDEP_CONTROL -0 (flag) 0=constant; 1=vary with file -0.000200 (kgN/m2/yr) wet+dry atmospheric deposition of N -Ndep_from1961.txt (filename) name of the N-dep file - -SITE -30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 (%) sand percentage by volume in rock-free soil -50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 (%) silt percentage by volume in rock-free soil -7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 (dimless) soil pH -248.0 (m) site elevation -46.95 (degrees) site latitude (- for S.Hem.) -0.20 (DIM) site shortwave albedo -9.00 (Celsius) mean annual air temperature -10.15 (Celsius) mean annual air temperature range -20.00 (mm) maximum height of pond water --9999 (dimless) measured runoff curve number --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (g/cm3) bulk density --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at saturation --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at field capacity --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at wilting point --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at hygroscopic water content - -EPC_FILE -c3grass.epc (filename) EPC file name - -W_STATE -0.0 (kg/m2) water stored in snowpack -1.0 (DIM) initial soil water as a proportion of field capacity - -CN_STATE -0.001 (kgC/m2) first-year maximum leaf carbon -0.001 (kgC/m2) first-year maximum fine root carbon -0.001 (kgC/m2) first-year maximum fruit carbon -0.001 (kgC/m2) first-year maximum softstem carbon -0.001 (kgC/m2) first-year maximum live woody stem carbon -0.001 (kgC/m2) first-year maximum live coarse root carbon -0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) coarse woody debris carbon -0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) litter carbon, labile pool -0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) litter carbon, unshielded cellulose pool -0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) litter carbon, shielded cellulose pool -0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) litter carbon, lignin pool -0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) soil carbon, fast microbial recycling pool -0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) soil carbon, medium microbial recycling pool -0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) soil carbon, slow microbial recycling pool -0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) soil carbon, recalcitrant SOM (slowest) -0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgN/m2) litter nitrogen, labile pool -0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgN/m2) soil mineralized nitrogen, NH4 pool -0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgN/m2) soil mineralized nitrogen, NO3 pool - -OUTPUT_CONTROL -spinup_ (filename) output prefix -0 (flag) writing daily output (0 = no; 1 = binary; 2 = ascii) -0 (flag) writing monthly average of daily output (0 = no; 1 = binary; 2 = ascii) -0 (flag) writing annual average of daily output (0 = no; 1 = binary; 2 = ascii) -0 (flag) writing annual output (0 = no; 1 = binary; 2 = ascii) -1 (flag) for on-screen progress indicator - -DAILY_OUTPUT -14 number of daily output variables -49 tsoil_2cm -52 tsoil_20cm -2599 vwc_2cm -2602 vwc_20cm -2751 m_soilstress -671 vegc_to_SNSC -171 evapotransp -2520 proj_LAI -407 STDBc_above -3004 daily_n2o -3008 daily_nbp -3009 daily_gpp -3014 daily_tr -2502 n_actphen - -ANNUAL_OUTPUT -12 number of annual output variables -0 onday -1 offday -3000 annprcp -3001 anntavg -3002 annrunoff -2765 ytd_maxplai -3024 cum_nee -3033 cum_Closs_THN_w -3035 cum_Closs_MOW -3037 cum_yieldC_HRV -3059 NH4_top10 -3060 NO3_top10 - -------------------- -MANAGEMENT_SECTION -------------------- -PLANTING -0 (flag) do PLANTING? 0=no; 1=yes; filepath=reading from file --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) PLANTING day --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) germination depth --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(n/m2) number of seedlings --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(g/1000n) weight of 1000-seed --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) C content of seed --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) emergence rate - -THINNING -0 (flag) do THINNING? 0=no; 1=yes; filepath=reading from file --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) THINNING day --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(prop) thinning rate of woody plant material --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(prop) thinning rate of non-woody plant material --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) transported part of stem --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) transported part of leaf - -MOWING -0 (flag) do MOWING? 0=no; 1=yes; filepath=reading from file -0 (flag) mowing method? 0 - fixday method, 1 - fixvalue method --9999 (m2/m2) fixed value of the LAI before MOWING (fixvalue method) --9999 (m2/m2) fixed value of the LAI after MOWING (fixvalue method) --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) MOWING day --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m2/m2) value of the LAI after MOWING (fixday method) --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) transported part of plant material - -GRAZING -0 (flag) do GRAZING? 0=no, 1=yes; filepath=reading from file --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) first day of GRAZING --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) last day of GRAZING --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kg/LSU) weight equivalent of one unit --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(LSU/ha) animal stocking rate: Livestock Units per hectare --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kg dry matter/LSU) daily ingested dry matter --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(prop) trampling effect (standing dead biome to litter) --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) ratio of DM intake formed excrement --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) ratio of excrement returning to litter --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) carbon content of dry matter --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) N content of manure --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) C content of manure --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN2O-N:kgN) manure emission factor for direct N2O (T10.21) --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/1000 kg animal mass/day) default N excretion rate (T10.19) --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgCH4/LSU/yr*) manure emission factor for CH4 (T10.14) --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgCH4/LSU/yr*) fermentation emission factor for CH4 (T10.11) - -HARVESTING -0 (flag) do HARVESTING? 0=no, 1=yes; filepath=reading from file --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) HARVESTING day --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgC/m2) soft stem C content after HARVESTING --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) transported part of plant material - -PLOUGHING -0 (flag) do PLOUGHING? 0=no, 1=yes; filepath=reading from file --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) PLOUGHING day --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) PLOUGHING depth --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(prop) dissolving coefficient of ploughed biome to litter - -FERTILIZING -0 (flag) do FERTILIZING? 0=no, 1=yes; filepath=reading from file --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) FERTILIZING day --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) fertilizing depth --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN fertilizer/ha/day) amount of fertilizer --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) dry matter content of fertilizer --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) nitrate content of fertilizer --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) ammonium content of fertilizer --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) organic nitrogen content of fertilizer --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgC/kg fertilizer) organic carbon content of fertilizer --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) labile fraction of fertilizer --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) unshielded cellulose fraction of fertilizer --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) shielded cellulose fraction of fertilizer --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) lignin fraction of fertilizer --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN2O-N:kgN) emission factor for N-additions - -IRRIGATION -0 (flag) do IRRIGATION? 0=no, 1=yes; filepath=reading from file --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) IRRIGATION day --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgH2O/m2/day) amount of water --9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) utilization coefficient of water - -END_INIT