diff --git a/RBBGCMuso/R/setupMuso.R b/RBBGCMuso/R/setupMuso.R index 2a98789..a36598c 100644 --- a/RBBGCMuso/R/setupMuso.R +++ b/RBBGCMuso/R/setupMuso.R @@ -295,26 +295,26 @@ setupMuso <- function(executable=NULL, annualVarCodes = gsub("\\s.*","",annualVarCodes) ) - if(getOption("RMuso_version")==6){ - manFile <- scan(iniInput[2],what="",n=1,skip=44,sep=" ") # HARDCODED -> UNTIL JSON VERSION - mgm <- readLines(manFile) - mgmConn <- file(manFile,open="r") - manTypes <- c("planting","thinning","mowing","grazing","harvesting","ploughing","fertilizing","irrigating") - mgmFiles <- rep("none",length(manTypes)) - if(scan(mgmConn,skip=3,n=1,what=integer())==1){ - mgmFiles[1] <- scan(mgmConn,skip=1,n=1,what="", sep = " ") - } - for(i in 2:length(mgmFiles)){ - if(scan(mgmConn,skip=2,n=1,what=integer())==1){ - mgmFiles[i] <- scan(mgmConn,skip=1,n=1,what="", sep =" " ) - } else { - blackhole<-scan(mgmConn,skip =1, n=1,what="") - } - } - names(mgmFiles) <- manTypes - settings[["management"]] <- mgmFiles - close(manConn) - } + # if(getOption("RMuso_version")==6){ + # manFile <- scan(iniInput[2],what="",n=1,skip=44,sep=" ") # HARDCODED -> UNTIL JSON VERSION + # mgm <- readLines(manFile) + # mgmConn <- file(manFile,open="r") + # manTypes <- c("planting","thinning","mowing","grazing","harvesting","ploughing","fertilizing","irrigating") + # mgmFiles <- rep("none",length(manTypes)) + # if(scan(mgmConn,skip=3,n=1,what=integer())==1){ + # mgmFiles[1] <- scan(mgmConn,skip=1,n=1,what="", sep = " ") + # } + # for(i in 2:length(mgmFiles)){ + # if(scan(mgmConn,skip=2,n=1,what=integer())==1){ + # mgmFiles[i] <- scan(mgmConn,skip=1,n=1,what="", sep =" " ) + # } else { + # blackhole<-scan(mgmConn,skip =1, n=1,what="") + # } + # } + # names(mgmFiles) <- manTypes + # settings[["management"]] <- mgmFiles + # close(manConn) + # } # if(writep!=nrow(grepHelper)){