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Roland Hollós 2023-02-07 20:09:23 +01:00
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#+END_HTML
* The RBBGCMuso Package
#+AUTHOR: Roland HOLLÓS, Dóra HIDY, Zoltán BARCZA
#+AUTHOR: Roland HOLLÓS, Zoltán BARCZA, Erzsébet KRISTÓF
Please cite this work as follows:
Hollós, R., Kristóf, E., Fodor, N., Hidy, D., Horváth, F., Barcza, Z. (2022).
Hollós, R., Kristóf, E., Fodor, N., Hidy, D., Horváth, F., Barcza, Z. (2023).
RBBGCMuso: an R package to support the application of the [[http://nimbus.elte.hu/bbgc/][Biome-BGCMuSo]] biogeochemical model. URL https://github.com/hollorol/RBBGCMuso.
*Current version: 0.7.0*
@ -233,7 +233,7 @@ At present musoQuickEffect is not usable for the allocation parameters due to re
*** Study the effect of ecophysiological parameters using paramSweep
The paramSweep function is the extension of the musoQuickEffect. It can test the effect of the multiple selected parameters on the model results in once. The result of the paramSweep function is a single HTML file with embedded images. paramSweep needs a csv file called parameters.csv which defines the parameters of interest and the corresponding parameter intervals. In case of the hhs sample dataset there is an example parameters.csv file (please open it and check). The structure of the parameters.csv file is simple. First, parameter name is needed (it can be anything but should refer to the parameter), then the line number of the EPC file is provided, then the possible minimum and maximum value of the parameter is given. Note that there is a tricky part in the parameters.csv as the parameter selection is not straightforward in case of multiple columns (see the end of the EPC file!). The logic is that fractinal part of a number is used to select the appropriate parameter from multiple columns. For example, "emergence,127.61,0,1000" means that in the 127th line of the EPC file there are 7 columns (numbering starts from 0, so it is 6), and we would like to adjust the 2nd column (marked by 1), which ends up with 127.61. 0,1000 means that sweep starts at 0 and ends with 1000. Invoke the paramSweep with simply issuing this command:
The paramSweep function is the extension of the musoQuickEffect. It can test the effect of the multiple selected parameters on the model results in once. The result of the paramSweep function is a single HTML file with embedded images. paramSweep needs a csv file called parameters.csv which defines the parameters of interest and the corresponding parameter intervals. In case of the hhs sample dataset there is an example parameters.csv file (please open it and check). The structure of the parameters.csv file is simple. First, parameter name is needed (it can be anything but should refer to the parameter), then the line number of the EPC file is provided, then the possible minimum and maximum value of the parameter is given. Note that there is a tricky part in the parameters.csv as the parameter selection is not straightforward in case of multiple columns (see the end of the EPC file!). The logic is that fractional part of a number is used to select the appropriate parameter from multiple columns. For example, "emergence,127.61,0,1000" means that in the 127th line of the EPC file there are 7 columns (numbering starts from 0, so it is 6), and we would like to adjust the 2nd column (marked by 1), which ends up with 127.61. 0,1000 means that sweep starts at 0 and ends with 1000. Invoke the paramSweep with simply issuing this command:
#+BEGIN_SRC R :eval no
paramSweep()
@ -259,4 +259,4 @@ E-mail: Roland HOLLÓS: hollorol@gmail.com; Zoltán BARCZA: zoltan.barcza@ttk.el
** Acknowledgements
The research was funded by the Széchenyi 2020 programme, the European Regional Development Fund and the Hungarian Government (GINOP-2.3.2-15-2016-00028).
The research was funded by the Széchenyi 2020 programme, the European Regional Development Fund and the Hungarian Government (GINOP-2.3.2-15-2016-00028), and by the National Multidisciplinary Laboratory for Climate Change (RRF-2.3.1-21-2022-00014) project.