From bdb58a9209b05d7bd4f7775e6e808ddf1a2eaaa5 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Zolt=C3=A1n=20BARCZA?= Date: Tue, 22 Jan 2019 11:28:23 +0100 Subject: [PATCH] Update README.org --- README.org | 23 ++++++++--------------- 1 file changed, 8 insertions(+), 15 deletions(-) diff --git a/README.org b/README.org index 1c9af64..b9cf04d 100644 --- a/README.org +++ b/README.org @@ -81,33 +81,26 @@ setwd("c:/model") In order to run the model as it is provided simply use the following command in R or RStudio: +#+BEGIN_SRC R :eval no runMuso(skipSpinup = FALSE) +#+END_SRC Note that by default runMuso skips the spinup simulation (in order to speed up the model execution), but in our case we do not yet have the result of the spinup run (the so-called endpoint file), so spinup simulation is obligatory. This is performed with the skipSpinup=FALSE parameter. If the simulation is successful, the results can be found in the C:\model directory. *** Visualization of the model output + + *** Perform Quick experiments + + *** Study the effect of ecophysiological parameters using parameterSweep + + *** Sensitivity analysis -** Advanced usage - -*** setupMuso -*** musoData -*** musoMapping -*** musoMappingFind -*** spinupMuso -*** normalMuso -*** calibMuso -*** plotMuso -*** plotMusoWithData -*** musoQuckEffect -*** musoMonte -*** musoSensi -** Contact E-mail: hollorol@gmail.com