diff --git a/RBBGCMuso/inst/examples/hhs/backup/c3grass_muso7.epc b/RBBGCMuso/inst/examples/hhs/backup/c3grass_muso7.epc new file mode 100644 index 0000000..c06cff3 --- /dev/null +++ b/RBBGCMuso/inst/examples/hhs/backup/c3grass_muso7.epc @@ -0,0 +1,142 @@ +ECOPHYS FILE - C3 grass muso6 +---------------------------------------------------------------------------------------- +FLAGS +0 (flag) biome type flag (1 = WOODY 0 = NON-WOODY) +0 (flag) woody type flag (1 = EVERGREEN 0 = DECIDUOUS) +1 (flag) photosyn. type flag (1 = C3 PSN 0 = C4 PSN) +---------------------------------------------------------------------------------------- +PLANT FUNCTIONING PARAMETERS +0 (yday) yearday to start new growth (when phenology flag = 0) +364 (yday) yearday to end litterfall (when phenology flag = 0) +0.5 (prop.) transfer growth period as fraction of growing season (when transferGDD_flag = 0) +0.5 (prop.) litterfall as fraction of growing season (when transferGDD_flag = 0) +0 (Celsius) base temperature +-9999 (Celsius) minimum temperature for growth displayed on current day (-9999: no T-dependence of allocation) +-9999 (Celsius) optimal1 temperature for growth displayed on current day (-9999: no T-dependence of allocation) +-9999 (Celsius) optimal2 temperature for growth displayed on current day (-9999: no T-dependence of allocation) +-9999 (Celsius) maxmimum temperature for growth displayed on current day (-9999: no T-dependence of allocation) +-9999 (Celsius) minimum temperature for carbon assimilation displayed on current day (-9999: no limitation) +-9999 (Celsius) optimal1 temperature for carbon assimilation displayed on current day (-9999: no limitation) +-9999 (Celsius) optimal2 temperature for carbon assimilation displayed on current day (-9999: no limitation) +-9999 (Celsius) maxmimum temperature for carbon assimilation displayed on current day (-9999: no limitation) +30 (Celsius) threshold temperature for ET-calculation (line 57 in INI file) using PT-method (-9999: no data - only PM-method) +1.0 (1/yr) annual leaf and fine root turnover fraction +0.00 (1/yr) annual live wood turnover fraction +0.03 (1/yr) annual fire mortality fraction +0.01 (1/vegper) whole-plant mortality fraction in vegetation period +0.2 (prop) dead stem biomass combustion proportion +0.3 (prop) coarse woody biomass combustion proportion +36.6 (kgC/kgN) C:N of leaves +45.0 (kgC/kgN) C:N of leaf litter, after retranslocation +50.0 (kgC/kgN) C:N of fine roots +36.6 *(kgC/kgN) C:N of fruit +36.6 (kgC/kgN) C:N of soft stem +0.0 *(kgC/kgN) C:N of live wood +0.0 *(kgC/kgN) C:N of dead wood +0.4 (kgC/kgDM) dry matter carbon content of leaves +0.4 (kgC/kgDM) dry matter carbon content of leaf litter +0.4 (kgC/kgDM) dry matter carbon content of fine roots +0.4 *(kgC/kgDM) dry matter carbon content of fruit +0.4 (kgC/kgDM) dry matter carbon content of soft stem +0.4 *(kgC/kgDM) dry matter carbon content of live wood +0.4 *(kgC/kgDM) dry matter carbon content of dead wood +0.68 (DIM) leaf litter labile proportion +0.23 (DIM) leaf litter cellulose proportion +0.34 (DIM) fine root labile proportion +0.44 (DIM) fine root cellulose proportion +0.68 *(DIM) fruit litter labile proportion +0.23 *(DIM) fruit litter cellulose proportion +0.68 (DIM) soft stem litter labile proportion +0.23 (DIM) soft stem litter cellulose proportion +0.00 *(DIM) dead wood cellulose proportion +0.01 (1/LAI/d) canopy water interception coefficient +0.63 (DIM) canopy light extinction coefficient +2.0 (g/MJ) potential radiation use efficiency +0.781 (DIM) radiation parameter1 (Jiang et al.2015) +-13.596 (DIM) radiation parameter2 (Jiang et al.2015) +2.0 (DIM) all-sided to projected leaf area ratio +2.0 (DIM) ratio of shaded SLA:sunlit SLA +0.14 (DIM) fraction of leaf N in Rubisco +0.03 (DIM) fraction of leaf N in PEP Carboxylase +0.004 (m/s) maximum stomatal conductance (projected area basis) +0.00006 (m/s) cuticular conductance (projected area basis) +0.04 (m/s) boundary layer conductance (projected area basis) +1.5 (m) maximum height of plant +0.8 (kgC) stem weight corresponding to maximum height +0.5 (dimless) plant height function shape parameter (slope) +4.0 (m) maximum depth of rooting zone +3.67 (DIM) root distribution parameter +0.4 (kgC) root weight corresponding to max root depth +0.5 (dimless) root depth function shape parameter (slope) +1000 (m/kg) root weight to root length conversion factor +0.3 (prop.) growth resp per unit of C grown +0.218 (kgC/kgN/d) maintenance respiration in kgC/day per kg of tissue N +0.1 (DIM) theoretical maximum prop. of non-structural and structural carbohydrates +0.24 (DIM) prop. of non-structural carbohydrates available for maintanance respiration +0.02 (kgN/m2/yr) symbiotic+asymbiotic fixation of N +0 (day) time delay for temperature in photosynthesis acclimation +---------------------------------------------------------------------------------------- +CROP SPECIFIC PARAMETERS +0 (DIM) number of phenophase of germination (from 1 to 7; 0: NO specific) +0 (DIM) number of phenophase of emergence (from 1 to 7; 0: NO specific) +0.5 (prop.) critical VWCratio (prop. to FC-WP) in germination +0 (DIM) number of phenophase of photoperiodic slowing effect (from 1 to 7; 0: NO effect) +20 (hour) critical photoslow daylength +0.005 (DIM) slope of relative photoslow development rate +0 (DIM) number of phenophase of vernalization (from 1 to 7; 0: NO effect) +0 (Celsius) critical vernalization temperature 1 +5 (Celsius) critical vernalization temperature 2 +8 (Celsius) critical vernalization temperature 3 +15 (Celsius) critical vernalization temperature 4 +0.04 (DIM) slope of relative vernalization development rate +50 (n) required vernalization days (in vernalization development rate) +0 (DIM) number of flowering phenophase (from 1 to 7;0: NO effect) +35 (Celsius) critical flowering heat stress temperature 1 +40 (Celsius) critical flowering heat stress temperature 2 +0.2 (prop.) theoretical maximum of flowering thermal stress mortality parameter +---------------------------------------------------------------------------------------- +STRESS AND SENESCENCE PARAMETERS +0.5 (prop) VWC ratio to calc. soil moisture limit 1 (prop. to FC-WP) +0.99 (prop) VWC ratio to calc. soil moisture limit 2 (prop. to SAT-FC) +0.4 (prop) minimum of soil moisture limit2 multiplicator (full anoxic stress value) +1000 (Pa) vapor pressure deficit: start of conductance reduction +4000 (Pa) vapor pressure deficit: complete conductance reduction +0.003 (prop.) maximum senescence mortality coefficient of aboveground plant material +0.001 (prop.) maximum senescence mortality coefficient of belowground plant material +0.0 (prop.) maximum senescence mortality coefficient of non-structured plant material +35 (Celsius) lower limit extreme high temperature effect on senescence mortality +40 (Celsius) upper limit extreme high temperature effect on senescence mortality +0.01 (prop.) turnover rate of wilted standing biomass to litter +0.047 (prop.) turnover rate of non-woody cut-down biomass to litter +0.01 (prop.) turnover rate of woody cut-down biomass to litter +17 (nday) drought tolerance parameter (critical value of DSWS) +0.3 (prop) soil water deficit effect on photosynthesis downregulation +---------------------------------------------------------------------------------------- +GROWING SEASON PARAMETERS +5 (kg/m2) crit. amount of snow limiting photosyn. +20 (Celsius) limit1 (under:full constrained) of HEATSUM index +60 (Celsius) limit2 (above:unconstrained) of HEATSUM index +0 (Celsius) limit1 (under:full constrained) of TMIN index +5 (Celsius) limit2 (above:unconstrained) of TMIN index +4000 (Pa) limit1 (above:full constrained) of VPD index +1000 (Pa) limit2 (under:unconstrained) of VPD index +0 (s) limit1 (under:full constrained) of DAYLENGTH index +0 (s) limit2 (above:unconstrained) of DAYLENGTH index +10 (day) moving average (to avoid the effects of extreme events) +0.10 (dimless) GSI limit1 (greater that limit -> start of vegper) +0.01 (dimless) GSI limit2 (less that limit -> end of vegper) +---------------------------------------------------------------------------------------- +PHENOLOGICAL (ALLOCATION) PARAMETERS (7 phenological phases) +phase1 phase2 phase3 phase4 phase5 phase6 phase7 (text) name of the phenophase +5000 200 500 200 400 200 100 (Celsius) length of phenophase (GDD) +0.3 0.4 0.4 0.4 0.4 0.4 0.4 (ratio) leaf ALLOCATION +0.5 0.4 0.4 0.4 0.4 0.4 0.4 (ratio) fine root ALLOCATION +0.0 0.0 0.0 0.0 0.0 0.0 0.0 (ratio) fruit ALLOCATION +0.2 0.2 0.2 0.2 0.2 0.2 0.2 (ratio) soft stem ALLOCATION +0 0 0 0 0 0 0 (ratio) live woody stem ALLOCATION +0 0 0 0 0 0 0 (ratio) dead woody stem ALLOCATION +0 0 0 0 0 0 0 (ratio) live coarse root ALLOCATION +0 0 0 0 0 0 0 (ratio) dead coarse root ALLOCATION +49 49 49 49 49 49 49 (m2/kgC) canopy average specific leaf area (projected area basis) +0.37 0.37 0.37 0.37 0.37 0.37 0.37 (prop.) current growth proportion +10000 10000 10000 10000 10000 10000 10000 (Celsius) maximal lifetime of plant tissue diff --git a/RBBGCMuso/inst/examples/hhs/backup/parameters.csv b/RBBGCMuso/inst/examples/hhs/backup/parameters.csv new file mode 100644 index 0000000..012e424 --- /dev/null +++ b/RBBGCMuso/inst/examples/hhs/backup/parameters.csv @@ -0,0 +1,17 @@ +ABREVIATION,INDEX,min,max +TRANSFERGROWTHP,11,0.1,1 +T_BASE,13,0,8 +CN_leaf,29,14.3,58.8 +CWIC,52,0.01,0.07 +CLEC,53,0.3,0.8 +FLNR,59,0.1,0.4 +MSTOMACOND,61,0.001,0.007 +BOUNDARYLAYERCOND,63,0.001,0.05 +ROOTDEPTH,67,0.5,3 +ROOTDISTRIB,68,0.2,5 +NFIXATION,76,0.002,0.03 +RELSWCCRIT1,99,0.4,1 +SENESCENCABG,104,0,0.1 +TURNOVEROFDEADBIOMASS,109,0.01,0.4 +SLA1,140.60,20,50 +CURRENTGROWTHPROP1,141.60,0.2,1.0 diff --git a/RBBGCMuso/inst/examples/hhs/backup/parameters2.csv b/RBBGCMuso/inst/examples/hhs/backup/parameters2.csv new file mode 100644 index 0000000..4029c42 --- /dev/null +++ b/RBBGCMuso/inst/examples/hhs/backup/parameters2.csv @@ -0,0 +1,22 @@ +ABREVIATION,INDEX,min,max +TRANSFERGROWTHP,11,0.1,1 +T_BASE,13,0,8 +WPM,26,0,0.1 +CN_leaf,29,14.3,58.8 +CWIC,52,0.01,0.07 +CLEC,53,0.3,0.8 +FLNR,59,0.1,0.2 +MSTOMACOND,61,0.001,0.007 +ROOTDEPTH,67,0.5,3 +ROOTDISTRIB,68,0.2,5 +RELSWCCRIT1,99,0.97,1 +RELSWCCRIT2,100,0.4,1 +SENESCENCABG,104,0,0.1 +AllocP_l, 132.60,0,1 +AllocP_fr,133.60,0,1 +AllocP_fr,134.60,0,0 +AllocP_ss,135.60,0,1 +AllocP_ls,136.60,0,0 +AllocP_ds,137.60,0,0 +AllocP_lr,138.60,0,0 +AllocP_dr,139.60,0,0