fix setupMuso()
This commit is contained in:
hollorol
parent
8bced13767
commit
22958bef4b
@ -1,64 +0,0 @@
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* using log directory ‘/home/hollorol/RBBGCMuso/RBBGCMuso.Rcheck’
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* using R version 3.4.1 (2017-06-30)
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* using platform: x86_64-pc-linux-gnu (64-bit)
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* using session charset: UTF-8
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* checking for file ‘RBBGCMuso/DESCRIPTION’ ... OK
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* this is package ‘RBBGCMuso’ version ‘0.3.0.0-1’
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* checking package namespace information ... OK
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* checking package dependencies ... OK
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* checking if this is a source package ... OK
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* checking if there is a namespace ... OK
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* checking for executable files ... OK
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* checking for hidden files and directories ... NOTE
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Found the following hidden files and directories:
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.Rhistory
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.gitignore
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R/.Rhistory
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.Rproj.user
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These were most likely included in error. See section ‘Package
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structure’ in the ‘Writing R Extensions’ manual.
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* checking for portable file names ... OK
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* checking for sufficient/correct file permissions ... OK
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* checking whether package ‘RBBGCMuso’ can be installed ... OK
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* checking installed package size ... OK
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* checking package directory ... OK
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* checking DESCRIPTION meta-information ... OK
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* checking top-level files ... OK
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* checking for left-over files ... OK
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* checking index information ... OK
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* checking package subdirectories ... OK
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* checking R files for non-ASCII characters ... OK
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* checking R files for syntax errors ... OK
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* checking whether the package can be loaded ... OK
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* checking whether the package can be loaded with stated dependencies ... OK
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* checking whether the package can be unloaded cleanly ... OK
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* checking whether the namespace can be loaded with stated dependencies ... OK
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* checking whether the namespace can be unloaded cleanly ... OK
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* checking loading without being on the library search path ... OK
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* checking dependencies in R code ... OK
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* checking S3 generic/method consistency ... OK
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* checking replacement functions ... OK
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* checking foreign function calls ... OK
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* checking R code for possible problems ... OK
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* checking Rd files ... OK
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* checking Rd metadata ... OK
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* checking Rd cross-references ... OK
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* checking for missing documentation entries ... OK
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* checking for code/documentation mismatches ... OK
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* checking Rd \usage sections ... OK
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* checking Rd contents ... OK
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* checking for unstated dependencies in examples ... OK
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* checking files in ‘vignettes’ ... WARNING
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Files in the 'vignettes' directory but no files in 'inst/doc':
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‘my-vignette.Rmd’
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* checking examples ... NONE
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* checking for unstated dependencies in vignettes ... OK
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* checking package vignettes in ‘inst/doc’ ... WARNING
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Package vignette without corresponding PDF/HTML:
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‘my-vignette.Rmd’
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* checking running R code from vignettes ... NONE
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* checking re-building of vignette outputs ... OK
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* checking PDF version of manual ... OK
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* DONE
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Status: 2 WARNINGs, 1 NOTE
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@ -1,9 +0,0 @@
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* installing *source* package ‘RBBGCMuso’ ...
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** R
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** preparing package for lazy loading
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** help
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*** installing help indices
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** building package indices
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** installing vignettes
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** testing if installed package can be loaded
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* DONE (RBBGCMuso)
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@ -1,906 +0,0 @@
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||||
LaTeX Info: Redefining \pageref on input line 6432.
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
defining Unicode char U+00E1 (decimal 225)
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||||
defining Unicode char U+00E2 (decimal 226)
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||||
defining Unicode char U+00E3 (decimal 227)
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||||
defining Unicode char U+00E4 (decimal 228)
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||||
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||||
defining Unicode char U+00E6 (decimal 230)
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||||
defining Unicode char U+00E7 (decimal 231)
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||||
defining Unicode char U+00E8 (decimal 232)
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||||
defining Unicode char U+00E9 (decimal 233)
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||||
defining Unicode char U+00EA (decimal 234)
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||||
defining Unicode char U+00EB (decimal 235)
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||||
defining Unicode char U+00EC (decimal 236)
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||||
defining Unicode char U+00ED (decimal 237)
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||||
defining Unicode char U+00EE (decimal 238)
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||||
defining Unicode char U+00EF (decimal 239)
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||||
defining Unicode char U+00F0 (decimal 240)
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||||
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||||
defining Unicode char U+00F2 (decimal 242)
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||||
defining Unicode char U+00F3 (decimal 243)
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||||
defining Unicode char U+00F4 (decimal 244)
|
||||
defining Unicode char U+00F5 (decimal 245)
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||||
defining Unicode char U+00F6 (decimal 246)
|
||||
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|
||||
defining Unicode char U+00F9 (decimal 249)
|
||||
defining Unicode char U+00FA (decimal 250)
|
||||
defining Unicode char U+00FB (decimal 251)
|
||||
defining Unicode char U+00FC (decimal 252)
|
||||
defining Unicode char U+00FD (decimal 253)
|
||||
defining Unicode char U+00FE (decimal 254)
|
||||
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|
||||
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|
||||
defining Unicode char U+0101 (decimal 257)
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
defining Unicode char U+0113 (decimal 275)
|
||||
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|
||||
defining Unicode char U+0115 (decimal 277)
|
||||
defining Unicode char U+0116 (decimal 278)
|
||||
defining Unicode char U+0117 (decimal 279)
|
||||
defining Unicode char U+0118 (decimal 280)
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
defining Unicode char U+0120 (decimal 288)
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
||||
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||||
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||||
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||||
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|
||||
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|
||||
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||||
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||||
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||||
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||||
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|
||||
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||||
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||||
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||||
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||||
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||||
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|
||||
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||||
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|
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||||
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|
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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|
||||
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||||
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|
||||
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|
||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
defining Unicode char U+2013 (decimal 8211)
|
||||
defining Unicode char U+2014 (decimal 8212)
|
||||
defining Unicode char U+2018 (decimal 8216)
|
||||
defining Unicode char U+2019 (decimal 8217)
|
||||
defining Unicode char U+201C (decimal 8220)
|
||||
defining Unicode char U+201D (decimal 8221)
|
||||
)
|
||||
Now handling font encoding OMS ...
|
||||
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|
||||
|
||||
(/usr/share/texmf-dist/tex/latex/base/omsenc.dfu
|
||||
File: omsenc.dfu 2017/01/28 v1.1t UTF-8 support for inputenc
|
||||
defining Unicode char U+00A7 (decimal 167)
|
||||
defining Unicode char U+00B6 (decimal 182)
|
||||
defining Unicode char U+00B7 (decimal 183)
|
||||
defining Unicode char U+2020 (decimal 8224)
|
||||
defining Unicode char U+2021 (decimal 8225)
|
||||
defining Unicode char U+2022 (decimal 8226)
|
||||
)
|
||||
Now handling font encoding OMX ...
|
||||
... no UTF-8 mapping file for font encoding OMX
|
||||
Now handling font encoding U ...
|
||||
... no UTF-8 mapping file for font encoding U
|
||||
Now handling font encoding TS1 ...
|
||||
... processing UTF-8 mapping file for font encoding TS1
|
||||
|
||||
(/usr/share/texmf-dist/tex/latex/base/ts1enc.dfu
|
||||
File: ts1enc.dfu 2017/01/28 v1.1t UTF-8 support for inputenc
|
||||
defining Unicode char U+00A2 (decimal 162)
|
||||
defining Unicode char U+00A3 (decimal 163)
|
||||
defining Unicode char U+00A4 (decimal 164)
|
||||
defining Unicode char U+00A5 (decimal 165)
|
||||
defining Unicode char U+00A6 (decimal 166)
|
||||
defining Unicode char U+00A7 (decimal 167)
|
||||
defining Unicode char U+00A8 (decimal 168)
|
||||
defining Unicode char U+00A9 (decimal 169)
|
||||
defining Unicode char U+00AA (decimal 170)
|
||||
defining Unicode char U+00AC (decimal 172)
|
||||
defining Unicode char U+00AE (decimal 174)
|
||||
defining Unicode char U+00AF (decimal 175)
|
||||
defining Unicode char U+00B0 (decimal 176)
|
||||
defining Unicode char U+00B1 (decimal 177)
|
||||
defining Unicode char U+00B2 (decimal 178)
|
||||
defining Unicode char U+00B3 (decimal 179)
|
||||
defining Unicode char U+00B4 (decimal 180)
|
||||
defining Unicode char U+00B5 (decimal 181)
|
||||
defining Unicode char U+00B6 (decimal 182)
|
||||
defining Unicode char U+00B7 (decimal 183)
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@ -1,16 +0,0 @@
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Package: RBBGCMuso
|
||||
Title: An R package for BiomeBGC-MuSo ecosystem modelling
|
||||
Version: 0.3.0.0-1
|
||||
Authors@R: person("Roland", "Hollo's", , "hollorol@gmail.com", role = c("aut", "cre"))
|
||||
Description: What the package does (one paragraph).
|
||||
License: GPL-2
|
||||
LazyData: true
|
||||
NeedsCompilation: no
|
||||
Packaged: 2017-07-19 14:00:04 UTC; hollorol
|
||||
Author: Roland Hollo's [aut, cre]
|
||||
Imports: utils, graphics
|
||||
Maintainer: Roland Hollo's <hollorol@gmail.com>
|
||||
RoxygenNote: 6.0.1
|
||||
Suggests: knitr, rmarkdown
|
||||
VignetteBuilder: knitr
|
||||
Built: R 3.4.1; ; 2017-07-24 21:43:04 UTC; unix
|
||||
@ -1,12 +0,0 @@
|
||||
calibMuso calibMuso
|
||||
corrigMuso corrigMuso
|
||||
fextension fextension
|
||||
getyearlycum getyearlycum
|
||||
getyearlymax getyearlymax
|
||||
musoDate It generates BiomeBGC-MuSo dates
|
||||
plotMuso plot the BBGCMuso output
|
||||
rungetMuso rungetMuso
|
||||
setupMuso setupMuso
|
||||
spinupMuso Run the BBGCMuso modell only in spinup phase,
|
||||
and debugging.
|
||||
supportedMuso supportedMuso
|
||||
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|
||||
# Generated by roxygen2: do not edit by hand
|
||||
|
||||
export(calibMuso)
|
||||
export(corrigMuso)
|
||||
export(getyearlycum)
|
||||
export(getyearlymax)
|
||||
export(musoDate)
|
||||
export(plotMuso)
|
||||
export(rungetMuso)
|
||||
export(spinupMuso)
|
||||
export(supportedMuso)
|
||||
import(graphics)
|
||||
import(utils)
|
||||
@ -1,27 +0,0 @@
|
||||
# File share/R/nspackloader.R
|
||||
# Part of the R package, http://www.R-project.org
|
||||
#
|
||||
# Copyright (C) 1995-2012 The R Core Team
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU General Public License as published by
|
||||
# the Free Software Foundation; either version 2 of the License, or
|
||||
# (at your option) any later version.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful,
|
||||
# but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
# GNU General Public License for more details.
|
||||
#
|
||||
# A copy of the GNU General Public License is available at
|
||||
# http://www.r-project.org/Licenses/
|
||||
|
||||
local({
|
||||
info <- loadingNamespaceInfo()
|
||||
pkg <- info$pkgname
|
||||
ns <- .getNamespace(as.name(pkg))
|
||||
if (is.null(ns))
|
||||
stop("cannot find namespace environment for ", pkg, domain = NA);
|
||||
dbbase <- file.path(info$libname, pkg, "R", pkg)
|
||||
lazyLoad(dbbase, ns, filter = function(n) n != ".__NAMESPACE__.")
|
||||
})
|
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|
||||
calibMuso calibMuso
|
||||
changemulline changemulline
|
||||
corrigMuso corrigMuso
|
||||
dayOfMonths dayOfMonths
|
||||
dayOfYears dayOfYears
|
||||
fextension fextension
|
||||
getyearlycum getyearlycum
|
||||
getyearlymax getyearlymax
|
||||
isLeapyear isLeapyear
|
||||
musoDate musoDate
|
||||
musoLeapYears musoLeapYears
|
||||
numcut numcut
|
||||
numcutall numcutall
|
||||
plotMuso plotMuso
|
||||
rungetMuso rungetMuso
|
||||
setupMuso setupMuso
|
||||
spinupMuso spinupMuso
|
||||
stamp stamp
|
||||
sumDaysOfPeriod sumDaysOfPeriod
|
||||
supportedMuso supportedMuso
|
||||
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|
||||
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml">
|
||||
<head><title>R: An R package for BiomeBGC-MuSo ecosystem modelling</title>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||||
<link rel="stylesheet" type="text/css" href="R.css" />
|
||||
</head><body>
|
||||
<h1> An R package for BiomeBGC-MuSo ecosystem modelling
|
||||
<img class="toplogo" src="../../../doc/html/Rlogo.svg" alt="[R logo]" />
|
||||
</h1>
|
||||
<hr/>
|
||||
<div style="text-align: center;">
|
||||
<a href="../../../doc/html/packages.html"><img class="arrow" src="../../../doc/html/left.jpg" alt="[Up]" /></a>
|
||||
<a href="../../../doc/html/index.html"><img class="arrow" src="../../../doc/html/up.jpg" alt="[Top]" /></a>
|
||||
</div><h2>Documentation for package ‘RBBGCMuso’ version 0.3.0.0-1</h2>
|
||||
|
||||
<ul><li><a href="../DESCRIPTION">DESCRIPTION file</a>.</li>
|
||||
</ul>
|
||||
|
||||
<h2>Help Pages</h2>
|
||||
|
||||
|
||||
<table width="100%">
|
||||
<tr><td style="width: 25%;"><a href="calibMuso.html">calibMuso</a></td>
|
||||
<td>calibMuso</td></tr>
|
||||
<tr><td style="width: 25%;"><a href="corrigMuso.html">corrigMuso</a></td>
|
||||
<td>corrigMuso</td></tr>
|
||||
<tr><td style="width: 25%;"><a href="fextension.html">fextension</a></td>
|
||||
<td>fextension</td></tr>
|
||||
<tr><td style="width: 25%;"><a href="getyearlycum.html">getyearlycum</a></td>
|
||||
<td>getyearlycum</td></tr>
|
||||
<tr><td style="width: 25%;"><a href="getyearlymax.html">getyearlymax</a></td>
|
||||
<td>getyearlymax</td></tr>
|
||||
<tr><td style="width: 25%;"><a href="musoDate.html">musoDate</a></td>
|
||||
<td>It generates BiomeBGC-MuSo dates</td></tr>
|
||||
<tr><td style="width: 25%;"><a href="plotMuso.html">plotMuso</a></td>
|
||||
<td>plot the BBGCMuso output</td></tr>
|
||||
<tr><td style="width: 25%;"><a href="rungetMuso.html">rungetMuso</a></td>
|
||||
<td>rungetMuso</td></tr>
|
||||
<tr><td style="width: 25%;"><a href="setupMuso.html">setupMuso</a></td>
|
||||
<td>setupMuso</td></tr>
|
||||
<tr><td style="width: 25%;"><a href="spinupMuso.html">spinupMuso</a></td>
|
||||
<td>Run the BBGCMuso modell only in spinup phase, and debugging.</td></tr>
|
||||
<tr><td style="width: 25%;"><a href="supportedMuso.html">supportedMuso</a></td>
|
||||
<td>supportedMuso</td></tr>
|
||||
</table>
|
||||
</body></html>
|
||||
@ -1,97 +0,0 @@
|
||||
body {
|
||||
background: white;
|
||||
color: black;
|
||||
}
|
||||
|
||||
a:link {
|
||||
background: white;
|
||||
color: blue;
|
||||
}
|
||||
|
||||
a:visited {
|
||||
background: white;
|
||||
color: rgb(50%, 0%, 50%);
|
||||
}
|
||||
|
||||
h1 {
|
||||
background: white;
|
||||
color: rgb(55%, 55%, 55%);
|
||||
font-family: monospace;
|
||||
font-size: x-large;
|
||||
text-align: center;
|
||||
}
|
||||
|
||||
h2 {
|
||||
background: white;
|
||||
color: rgb(40%, 40%, 40%);
|
||||
font-family: monospace;
|
||||
font-size: large;
|
||||
text-align: center;
|
||||
}
|
||||
|
||||
h3 {
|
||||
background: white;
|
||||
color: rgb(40%, 40%, 40%);
|
||||
font-family: monospace;
|
||||
font-size: large;
|
||||
}
|
||||
|
||||
h4 {
|
||||
background: white;
|
||||
color: rgb(40%, 40%, 40%);
|
||||
font-family: monospace;
|
||||
font-style: italic;
|
||||
font-size: large;
|
||||
}
|
||||
|
||||
h5 {
|
||||
background: white;
|
||||
color: rgb(40%, 40%, 40%);
|
||||
font-family: monospace;
|
||||
}
|
||||
|
||||
h6 {
|
||||
background: white;
|
||||
color: rgb(40%, 40%, 40%);
|
||||
font-family: monospace;
|
||||
font-style: italic;
|
||||
}
|
||||
|
||||
img.toplogo {
|
||||
width: 4em;
|
||||
vertical-align: middle;
|
||||
}
|
||||
|
||||
img.arrow {
|
||||
width: 30px;
|
||||
height: 30px;
|
||||
border: 0;
|
||||
}
|
||||
|
||||
span.acronym {
|
||||
font-size: small;
|
||||
}
|
||||
|
||||
span.env {
|
||||
font-family: monospace;
|
||||
}
|
||||
|
||||
span.file {
|
||||
font-family: monospace;
|
||||
}
|
||||
|
||||
span.option{
|
||||
font-family: monospace;
|
||||
}
|
||||
|
||||
span.pkg {
|
||||
font-weight: bold;
|
||||
}
|
||||
|
||||
span.samp{
|
||||
font-family: monospace;
|
||||
}
|
||||
|
||||
div.vignettes a:hover {
|
||||
background: rgb(85%, 85%, 85%);
|
||||
}
|
||||
File diff suppressed because it is too large
Load Diff
@ -7,6 +7,7 @@ export(getyearlymax)
|
||||
export(musoDate)
|
||||
export(plotMuso)
|
||||
export(rungetMuso)
|
||||
export(setupMuso)
|
||||
export(spinupMuso)
|
||||
export(supportedMuso)
|
||||
import(graphics)
|
||||
|
||||
Binary file not shown.
Loading…
Reference in New Issue
Block a user