Making examples
This commit is contained in:
Roland Hollós
parent
2de9c649c1
commit
34c2089c4b
@ -3,6 +3,7 @@
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export(OtableMaker)
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export(OtableMaker)
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export(calibMuso)
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export(calibMuso)
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export(cleanupMuso)
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export(cleanupMuso)
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export(copyMusoExamleTo)
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export(corrigMuso)
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export(corrigMuso)
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export(getyearlycum)
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export(getyearlycum)
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export(getyearlymax)
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export(getyearlymax)
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58
RBBGCMuso/R/musoExamples.R
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58
RBBGCMuso/R/musoExamples.R
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#'copyMusoExampleTo
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#'
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#'With this function you can copy RBBGCMuso example library whereever you want
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#'
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#'@param example The name of the example file, if it is NULL tcl/tk menu will pop up to select.
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#'@return List of two matrices: A and B matrix for musoRandomizer
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#'@import stats
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#'@import magrittr
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#'@import dplyr
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#'@export
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copyMusoExamleTo <- function(example = NULL, destination = NULL){
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WindowsP <- Sys.info()[1] == "Windows"
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chooseExample <- function(){
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choiceWin <- tcltk::tktoplevel()
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tcltk::tclRequire("BWidget")
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tcltk::tktitle(choiceWin) <- "Choose an example!"
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tcltk::tcl("wm","geometry",choiceWin,"200x50")
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choiceValues <- basename(list.dirs(system.file("examples","",package = "RBBGCMuso"),recursive = FALSE))
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choices <- tcltk::tkwidget(choiceWin,"ComboBox",
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editable = FALSE, values = choiceValues,
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textvariable = tclVar(choiceValues[1]))
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tkpack(choices)
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choiceValue <- NA
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closeSelection <- tcltk::tkwidget(choiceWin,"button",text ="Select", command =function (){
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choiceValue <<- tcltk::tclvalue(tcltk::tcl(choices,"get"))
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tkdestroy(choiceWin)
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})
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tcltk::tkpack(closeSelection)
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while(as.numeric(tcltk::tclvalue(tcltk::tcl("winfo","exists",choiceWin)))){
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}
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return(choiceValue)
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}
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if(is.null(example)){
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cExample<-chooseExample()
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}
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if(is.null(destination)){
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destination<-tcltk::tk_choose.dir(getwd(), "Choose folder to copy the examples!")
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}
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return(c(cExample,destination))
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}
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## choiceWin <- tcltk::tktoplevel()
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## tclRequire("BWidget")
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##
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## choiceValues <- basename(list.dirs("~/Documents/projects",recursive = FALSE))
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## choices <- tkwidget(choiceWin,"ComboBox", editable = FALSE, values = choiceValues, textvariable = tclVar(choiceValues[1]))
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## tkpack(choices)
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## filename<- tclvalue(tcl(choices,"get"))
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## filename
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55
RBBGCMuso/inst/examples/hegyhatsal/CO2_from1961.txt
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55
RBBGCMuso/inst/examples/hegyhatsal/CO2_from1961.txt
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@ -0,0 +1,55 @@
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1961 317.33
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1962 318.08
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1963 318.70
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1964 319.36
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1965 320.02
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1966 321.09
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1967 321.99
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1968 322.93
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1969 324.21
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1970 325.24
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1971 326.06
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1972 327.18
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1973 328.84
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1974 329.73
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1975 330.73
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1976 331.83
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1977 333.25
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1978 334.60
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1979 336.85
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1980 338.69
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1981 339.93
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1982 341.13
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1983 342.78
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1984 344.42
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1985 345.90
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1986 347.15
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1987 348.93
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1988 351.48
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1989 352.91
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1990 354.19
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1991 355.59
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1992 356.37
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1993 357.04
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1994 358.88
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1995 360.88
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1996 362.64
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1997 363.76
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1998 366.63
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1999 368.31
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2000 369.48
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2001 372.59
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2002 374.37
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2003 378.04
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2004 380.88
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2005 383.88
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2006 385.64
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2007 385.76
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2008 386.13
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2009 387.37
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2010 389.85
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2011 391.62
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2012 393.82
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2013 396.48
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2014 398.61
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2015 400.00
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9
RBBGCMuso/inst/examples/hegyhatsal/CO2_from2007.txt
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9
RBBGCMuso/inst/examples/hegyhatsal/CO2_from2007.txt
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2007 385.76
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2008 386.13
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2009 387.37
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2010 389.85
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2011 391.62
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2012 393.82
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2013 396.48
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2014 398.61
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2015 400.00
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BIN
RBBGCMuso/inst/examples/hegyhatsal/HU-He2-muso5.zip
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BIN
RBBGCMuso/inst/examples/hegyhatsal/HU-He2-muso5.zip
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Binary file not shown.
55
RBBGCMuso/inst/examples/hegyhatsal/Ndep_from1961.txt
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RBBGCMuso/inst/examples/hegyhatsal/Ndep_from1961.txt
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1961 0.0008407
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1962 0.0008601
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1963 0.0008795
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1964 0.0008989
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1965 0.0009183
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1966 0.0009378
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1967 0.0009572
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1968 0.0009766
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1969 0.0009960
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1970 0.0010348
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1971 0.0010591
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1972 0.0010465
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1973 0.0010524
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1974 0.0010582
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1975 0.0010641
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1976 0.0010699
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1977 0.0010758
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1978 0.0010816
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1979 0.0010875
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1980 0.0010933
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1981 0.0010992
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1982 0.0011050
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1983 0.0011109
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1984 0.0011167
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1985 0.0011226
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1986 0.0011284
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1987 0.0011343
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1988 0.0011401
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1989 0.0011460
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1990 0.0011519
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1991 0.0011577
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1992 0.0011636
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1993 0.0011694
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1994 0.0011753
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1995 0.0011811
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1996 0.0011870
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1997 0.0011928
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1998 0.0011987
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1999 0.0012045
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2000 0.0012104
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2001 0.0012239
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2002 0.0012347
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2003 0.0012654
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2004 0.0012762
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2005 0.0012870
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2006 0.0012977
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2007 0.0013085
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2008 0.0013192
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2009 0.0013200
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2010 0.0013407
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2011 0.0013515
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2012 0.0013722
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2013 0.0013830
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2014 0.0013938
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2015 0.0014000
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9
RBBGCMuso/inst/examples/hegyhatsal/Ndep_from2007.txt
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9
RBBGCMuso/inst/examples/hegyhatsal/Ndep_from2007.txt
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2007 0.0013085
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2008 0.0013192
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2009 0.0013200
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2010 0.0013407
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2011 0.0013515
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2012 0.0013722
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2013 0.0013830
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2014 0.0013938
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2014 0.0014000
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BIN
RBBGCMuso/inst/examples/hegyhatsal/bin/muso
Executable file
BIN
RBBGCMuso/inst/examples/hegyhatsal/bin/muso
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Binary file not shown.
180
RBBGCMuso/inst/examples/hegyhatsal/c3grass_apriori_MuSo5.epc
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180
RBBGCMuso/inst/examples/hegyhatsal/c3grass_apriori_MuSo5.epc
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ECOPHYS FILE - C3 grass muso5
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----------------------------------------------------------------------------------------
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FLAGS
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0 (flag) biome type flag (1 = WOODY 0 = NON-WOODY)
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0 (flag) woody type flag (1 = EVERGREEN 0 = DECIDUOUS)
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1 (flag) photosyn. type flag (1 = C3 PSN 0 = C4 PSN)
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1 (flag) phenology flag (1 = MODEL PHENOLOGY 0 = USER-SPECIFIED PHENOLOGY)
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0 (flag) transferGDD flag (1= transfer calc. from GDD 0 = transfer calc. from EPC)
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1 (flag) q10 flag (1 = temperature dependent q10 value; 0= constans q10 value)
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0 (flag) acclimation flag (1 = acclimation 0 = no acclimation)
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1 (flag) CO2 conductance reduction flag (0: no effect, 1: multiplier)
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1 (flag) use GSI index to calculate growing season (0: no GSI, 1: GSI)
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0 (flag) soil temperature calculation method (0: Zheng, 1: DSSAT)
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1 (flag) soil hydrological calculation method (0: Richards, 1: tipping DSSAT)
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0 (int) discretization level of SWC calculation (0: low, 1: medium, 2: high)
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0 (flag) photosynthesis calculation method (0: Farquhar, 1: DSSAT)
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0 (flag) evapotranspiration calculation method (0: Penman-Montieth, 1: Priestly-Taylor)
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0 (flag) radiation calculation method (0: SWabs, 1: Rn)
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----------------------------------------------------------------------------------------
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PLANT FUNCTIONING PARAMETERS
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0 (yday) yearday to start new growth (when phenology flag = 0)
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364 (yday) yearday to end litterfall (when phenology flag = 0)
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0.5 (prop.) transfer growth period as fraction of growing season (when transferGDD_flag = 0)
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0.5 (prop.) litterfall as fraction of growing season (when transferGDD_flag = 0)
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5 (Celsius) base temperature
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0 (Celsius) minimum temperature for growth displayed on current day (-9999: no T-dependence of allocation)
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10 (Celsius) optimal1 temperature for growth displayed on current day (-9999: no T-dependence of allocation)
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30 (Celsius) optimal2 temperature for growth displayed on current day (-9999: no T-dependence of allocation)
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40 (Celsius) maxmimum temperature for growth displayed on current day (-9999: no T-dependence of allocation)
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0 (Celsius) minimum temperature for carbon assimilation displayed on current day (-9999: no limitation)
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10 (Celsius) optimal1 temperature for carbon assimilation displayed on current day (-9999: no limitation)
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30 (Celsius) optimal2 temperature for carbon assimilation displayed on current day (-9999: no limitation)
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50 (Celsius) maxmimum temperature for carbon assimilation displayed on current day (-9999: no limitation)
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1.0 (1/yr) annual leaf and fine root turnover fraction
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0.00 (1/yr) annual live wood turnover fraction
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0.05 (1/yr) annual whole-plant mortality fraction
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0.0 (1/yr) annual fire mortality fraction
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25.0 (kgC/kgN) C:N of leaves
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45.0 (kgC/kgN) C:N of leaf litter, after retranslocation
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50.0 (kgC/kgN) C:N of fine roots
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25.0 *(kgC/kgN) C:N of fruit
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25.0 (kgC/kgN) C:N of soft stem
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0.0 *(kgC/kgN) C:N of live wood
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0.0 *(kgC/kgN) C:N of dead wood
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0.68 (DIM) leaf litter labile proportion
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0.23 (DIM) leaf litter cellulose proportion
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0.34 (DIM) fine root labile proportion
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0.44 (DIM) fine root cellulose proportion
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0.68 *(DIM) fruit litter labile proportion
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0.23 *(DIM) fruit litter cellulose proportion
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0.68 (DIM) soft stem litter labile proportion
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0.23 (DIM) soft stem litter cellulose proportion
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0.00 *(DIM) dead wood cellulose proportion
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0.01 (1/LAI/d) canopy water interception coefficient
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0.50 (DIM) canopy light extinction coefficient
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2.0 (g/MJ) potential radiation use efficiency
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0.781 (DIM) radiation parameter1 (Jiang et al.2015)
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-13.596 (DIM) radiation parameter2 (Jiang et al.2015)
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2.0 (DIM) all-sided to projected leaf area ratio
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2.0 (DIM) ratio of shaded SLA:sunlit SLA
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0.2 (DIM) fraction of leaf N in Rubisco
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0.03 (DIM) fraction of leaf N in PEP Carboxylase
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0.004 (m/s) maximum stomatal conductance (projected area basis)
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0.00006 (m/s) cuticular conductance (projected area basis)
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0.04 (m/s) boundary layer conductance (projected area basis)
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1.00 (prop) relative SWC (prop. to FC) to calc. soil moisture limit 1 (-9999: not used)
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0.99 (prop) relative SWC (prop. to SAT) to calc. soil moisture limit 2 (-9999: not used)
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-9999 (prop) relative PSI (prop. to FC) to calc. soil moisture limit 1 (-9999: not used)
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-9999 (prop) relative PSI (prop. to SAT) to calc. soil moisture limit 2 (-9999: not used)
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1000 (Pa) vapor pressure deficit: start of conductance reduction
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5000 (Pa) vapor pressure deficit: complete conductance reduction
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1.5 (m) maximum height of plant
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250 *(kgC/m2) stem weight at which maximum height attended
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1.0 (m) maximum depth of rooting zone
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3.67 (DIM) root distribution parameter
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0.4 (kgC/m2) rootlenght parameter 1 (estimated max root weight)
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0.5 (prop.) rootlenght parameter 2 (slope)
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0.3 (prop.) growth resp per unit of C grown
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0.218 (kgC/kgN/d) maintenance respiration in kgC/day per kg of tissue N
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0.1 (DIM) theoretical maximum prop. of non-structural and structural carbohydrates
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0.3 (DIM) prop. of non-structural carbohydrates available for maintanance respiration
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0.0005 (kgN/m2/yr) symbiotic+asymbiotic fixation of N
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----------------------------------------------------------------------------------------
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CROP SPECIFIC PARAMETERS
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0 (DIM) number of phenophase of germination (from 1 to 7; 0: NO specific)
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0 (DIM) number of phenophase of emergence (from 1 to 7; 0: NO specific)
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0.5 (prop.) critical relative SWC (prop. to FC) in germination
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-9999 (DIM) number of phenophase of photoperiodic slowing effect (from 1 to 7; -9999: NO effect)
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20 (hour) critical photoslow daylength
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0.005 (DIM) slope of relative photoslow development rate
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-9999 (DIM) number of phenophase of vernalization (from 1 to 7; -9999: NO)
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0 (Celsius) critical vernalization temperature 1
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5 (Celsius) critical vernalization temperature 2
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8 (Celsius) critical vernalization temperature 3
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15 (Celsius) critical vernalization temperature 4
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0.04 (DIM) slope of relative vernalization development rate
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50 (n) required vernalization days (in vernalization development rate)
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-9999 (DIM) number of flowering phenophase (from 1 to 7; -9999: NO effect)
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35 (Celsius) critical flowering heat stress temperature 1
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40 (Celsius) critical flowering heat stress temperature 2
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0.2 (prop.) mortality parameter of flowering thermal stress
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----------------------------------------------------------------------------------------
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SENESCENCE AND SOIL PARAMETERS
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0.05 (prop.) maximum senescence mortality coefficient of aboveground plant material
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0.05 (prop.) maximum senescence mortality coefficient of belowground plant material
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0.0 (prop.) maximum senescence mortality coefficient of non-structured plant material
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2 (prop) effect of extreme high temperature on senesncene mortality
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30 (Celsius) lower limit extreme high temperature effect on senescence mortality
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40 (Celsius) upper limit extreme high temperature effect on senescence mortality
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-9999 (Celsius) maximal lifetime of plant tissue (-9999: no genetically programmed senescence)
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0.01 (prop.) turnover rate of wilted standing biomass to litter
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0.05 (prop.) turnover rate of non-woody cut-down biomass to litter
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0.01 (prop.) turnover rate of woody cut-down biomass to litter
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30 (prop.) drought tolerance parameter (critical value of DSWS)
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0.02 (prop.) denitrification rate per g of CO2 respiration of SOM
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0.2 (prop.) nitrification coefficient 1
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0.1 (prop.) nitrification coefficient 2
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0.02 (prop.) coefficient of N2O emission of nitrification
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0.5 (prop.) proprortion of NH4 flux of N-deposition
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0.1 (prop.) NH4 mobilen proportion
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1.0 (prop.) NO3 mobilen proportion
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10 (m) e-folding depth of decomposition rate's depth scalar
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0.001 (prop.) fraction of dissolved part of SOIL1 organic matter
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0.001 (prop.) fraction of dissolved part of SOIL2 organic matter
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0.001 (prop.) fraction of dissolved part of SOIL3 organic matter
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0.001 (prop.) fraction of dissolved part of SOIL4 organic matter
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0.6 (DIM) ratio of bare soil evaporation and pot.evaporation
|
||||||
|
----------------------------------------------------------------------------------------
|
||||||
|
RATE SCALARS
|
||||||
|
0.39 (DIM) respiration fractions for fluxes between compartments (l1s1)
|
||||||
|
0.55 (DIM) respiration fractions for fluxes between compartments (l2s2)
|
||||||
|
0.29 (DIM) respiration fractions for fluxes between compartments (l4s3)
|
||||||
|
0.28 (DIM) respiration fractions for fluxes between compartments (s1s2)
|
||||||
|
0.46 (DIM) respiration fractions for fluxes between compartments (s2s3)
|
||||||
|
0.55 (DIM) respiration fractions for fluxes between compartments (s3s4)
|
||||||
|
0.7 (DIM) rate constant scalar of labile litter pool
|
||||||
|
0.07 (DIM) rate constant scalar of cellulose litter pool
|
||||||
|
0.014 (DIM) rate constant scalar of lignin litter pool
|
||||||
|
0.07 (DIM) rate constant scalar of fast microbial recycling pool
|
||||||
|
0.014 (DIM) rate constant scalar of medium microbial recycling pool
|
||||||
|
0.0014 (DIM) rate constant scalar of slow microbial recycling pool
|
||||||
|
0.0001 (DIM) rate constant scalar of recalcitrant SOM (humus) pool
|
||||||
|
0.001 (DIM) rate constant scalar of physical fragmentation of coarse woody debris
|
||||||
|
----------------------------------------------------------------------------------------
|
||||||
|
GROWING SEASON PARAMETERS
|
||||||
|
5 (kg/m2) crit. amount of snow limiting photosyn.
|
||||||
|
20 (Celsius) limit1 (under:full constrained) of HEATSUM index
|
||||||
|
60 (Celsius) limit2 (above:unconstrained) of HEATSUM index
|
||||||
|
0 (Celsius) limit1 (under:full constrained) of TMIN index
|
||||||
|
5 (Celsius) limit2 (above:unconstrained) of TMIN index
|
||||||
|
4000 (Pa) limit1 (above:full constrained) of VPD index
|
||||||
|
1000 (Pa) limit2 (under:unconstrained) of VPD index
|
||||||
|
0 (s) limit1 (under:full constrained) of DAYLENGTH index
|
||||||
|
0 (s) limit2 (above:unconstrained) of DAYLENGTH index
|
||||||
|
10 (day) moving average (to avoid the effects of extreme events)
|
||||||
|
0.10 (dimless) GSI limit1 (greater that limit -> start of vegper)
|
||||||
|
0.01 (dimless) GSI limit2 (less that limit -> end of vegper)
|
||||||
|
----------------------------------------------------------------------------------------
|
||||||
|
CH4 PARAMETERS
|
||||||
|
212.5 (DIM) param1 for CH4 calculations (empirical function of BD)
|
||||||
|
1.81 (DIM) param2 for CH4 calculations (empirical function of BD)
|
||||||
|
-1.353 (DIM) param1 for CH4 calculations (empirical function of VWC)
|
||||||
|
0.2 (DIM) param2 for CH4 calculations (empirical function of VWC)
|
||||||
|
1.781 (DIM) param3 for CH4 calculations (empirical function of VWC)
|
||||||
|
6.786 (DIM) param4 for CH4 calculations (empirical function of VWC)
|
||||||
|
0.010 (DIM) param1 for CH4 calculations (empirical function of Tsoil)
|
||||||
|
----------------------------------------------------------------------------------------
|
||||||
|
PHENOLOGICAL (ALLOCATION) PARAMETERS (7 phenological phases)
|
||||||
|
phase1 phase2 phase3 phase4 phase5 phase6 phase7 (text) name of the phenophase
|
||||||
|
500 200 500 200 400 200 100 (Celsius) length of phenophase (GDD)
|
||||||
|
0.4 0.4 0.4 0.4 0.4 0.4 0.4 (ratio) leaf ALLOCATION
|
||||||
|
0.2 0.2 0.2 0.2 0.2 0.2 0.2 (ratio) fine root ALLOCATION
|
||||||
|
0.2 0.2 0.2 0.2 0.2 0.2 0.2 (ratio) fruit ALLOCATION
|
||||||
|
0.2 0.2 0.2 0.2 0.2 0.2 0.2 (ratio) soft stem ALLOCATION
|
||||||
|
0 0 0 0 0 0 0 (ratio) live woody stem ALLOCATION
|
||||||
|
0 0 0 0 0 0 0 (ratio) dead woody stem ALLOCATION
|
||||||
|
0 0 0 0 0 0 0 (ratio) live coarse root ALLOCATION
|
||||||
|
0 0 0 0 0 0 0 (ratio) dead coarse root ALLOCATION
|
||||||
|
49 49 49 49 49 49 49 (m2/kgC) canopy average specific leaf area (projected area basis)
|
||||||
|
0.5 0.5 0.5 0.5 0.5 0.5 0.5 (prop.) current growth proportion
|
||||||
19714
RBBGCMuso/inst/examples/hegyhatsal/hhs_1961-2014.mtc43
Normal file
19714
RBBGCMuso/inst/examples/hegyhatsal/hhs_1961-2014.mtc43
Normal file
File diff suppressed because it is too large
Load Diff
3289
RBBGCMuso/inst/examples/hegyhatsal/hhs_2007-2015.mtc43
Normal file
3289
RBBGCMuso/inst/examples/hegyhatsal/hhs_2007-2015.mtc43
Normal file
File diff suppressed because it is too large
Load Diff
30
RBBGCMuso/inst/examples/hegyhatsal/mowing_hhs_2007-2015.txt
Normal file
30
RBBGCMuso/inst/examples/hegyhatsal/mowing_hhs_2007-2015.txt
Normal file
@ -0,0 +1,30 @@
|
|||||||
|
(yday) MOWING day
|
||||||
|
168 -9999 -9999 -9999 -9999 -9999 -9999
|
||||||
|
151 231 -9999 -9999 -9999 -9999 -9999
|
||||||
|
159 219 -9999 -9999 -9999 -9999 -9999
|
||||||
|
163 269 -9999 -9999 -9999 -9999 -9999
|
||||||
|
152 233 -9999 -9999 -9999 -9999 -9999
|
||||||
|
145 230 -9999 -9999 -9999 -9999 -9999
|
||||||
|
167 272 -9999 -9999 -9999 -9999 -9999
|
||||||
|
160 272 -9999 -9999 -9999 -9999 -9999
|
||||||
|
164 273 -9999 -9999 -9999 -9999 -9999
|
||||||
|
(m2/m2) value of the LAI after MOWING (fixday method)
|
||||||
|
0.52 0.52 -9999 -9999 -9999 -9999 -9999
|
||||||
|
0.52 0.52 -9999 -9999 -9999 -9999 -9999
|
||||||
|
0.52 0.52 -9999 -9999 -9999 -9999 -9999
|
||||||
|
0.52 0.52 -9999 -9999 -9999 -9999 -9999
|
||||||
|
0.52 0.52 -9999 -9999 -9999 -9999 -9999
|
||||||
|
0.52 0.52 -9999 -9999 -9999 -9999 -9999
|
||||||
|
0.52 0.52 -9999 -9999 -9999 -9999 -9999
|
||||||
|
0.52 0.52 -9999 -9999 -9999 -9999 -9999
|
||||||
|
0.52 0.52 -9999 -9999 -9999 -9999 -9999
|
||||||
|
(%) transported part of plant material
|
||||||
|
90.0 90.0 -9999 -9999 -9999 -9999 -9999
|
||||||
|
90.0 90.0 -9999 -9999 -9999 -9999 -9999
|
||||||
|
90.0 90.0 -9999 -9999 -9999 -9999 -9999
|
||||||
|
90.0 90.0 -9999 -9999 -9999 -9999 -9999
|
||||||
|
90.0 90.0 -9999 -9999 -9999 -9999 -9999
|
||||||
|
90.0 90.0 -9999 -9999 -9999 -9999 -9999
|
||||||
|
90.0 90.0 -9999 -9999 -9999 -9999 -9999
|
||||||
|
90.0 90.0 -9999 -9999 -9999 -9999 -9999
|
||||||
|
90.0 90.0 -9999 -9999 -9999 -9999 -9999
|
||||||
204
RBBGCMuso/inst/examples/hegyhatsal/n.ini
Normal file
204
RBBGCMuso/inst/examples/hegyhatsal/n.ini
Normal file
@ -0,0 +1,204 @@
|
|||||||
|
BBGC_MuSo simulation (missing data: -9999)
|
||||||
|
|
||||||
|
MET_INPUT
|
||||||
|
hhs_2007-2015.mtc43 (filename) met file name
|
||||||
|
4 (int) number of header lines in met file
|
||||||
|
365 (int) number of simdays in last simyear (truncated year: < 365)
|
||||||
|
|
||||||
|
RESTART
|
||||||
|
1 (flag) 1 = read restart; 0 = dont read restart
|
||||||
|
0 (flag) 1 = write restart; 0 = dont write restart
|
||||||
|
0 (flag) 1 = use restart metyear; 0 = reset metyear
|
||||||
|
hhs_apriori_MuSo5.endpoint (filename) name of the input restart file
|
||||||
|
hhs_apriori_MuSo5.endpoint (filename) name of the output restart file
|
||||||
|
|
||||||
|
TIME_DEFINE
|
||||||
|
9 (int) number of meteorological data years
|
||||||
|
9 (int) number of simulation years
|
||||||
|
2007 (int) first simulation year
|
||||||
|
0 (flag) 1 = spinup run; 0 = normal run
|
||||||
|
6000 (int) maximum number of spinup years
|
||||||
|
|
||||||
|
CLIM_CHANGE
|
||||||
|
0.0 (degC) - offset for Tmax
|
||||||
|
0.0 (degC) - offset for Tmin
|
||||||
|
1.0 (degC) - multiplier for PRCP
|
||||||
|
1.0 (degC) - multiplier for VPD
|
||||||
|
1.0 (degC) - multiplier for RAD
|
||||||
|
|
||||||
|
CO2_CONTROL
|
||||||
|
1 (flag) 0=constant; 1=vary with file
|
||||||
|
395.0 (ppm) constant atmospheric CO2 concentration
|
||||||
|
CO2_from2007.txt (filename) name of the CO2 file
|
||||||
|
|
||||||
|
NDEP_CONTROL
|
||||||
|
1 (flag) 0=constant; 1=vary with file
|
||||||
|
0.001400 (kgN/m2/yr) wet+dry atmospheric deposition of N
|
||||||
|
Ndep_from2007.txt (filename) name of the N-dep file
|
||||||
|
|
||||||
|
SITE
|
||||||
|
30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 (%) sand percentage by volume in rock-free soil
|
||||||
|
50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 (%) silt percentage by volume in rock-free soil
|
||||||
|
7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 (dimless) soil pH
|
||||||
|
248.0 (m) site elevation
|
||||||
|
46.95 (degrees) site latitude (- for S.Hem.)
|
||||||
|
0.20 (DIM) site shortwave albedo
|
||||||
|
9.00 (Celsius) mean annual air temperature
|
||||||
|
10.15 (Celsius) mean annual air temperature range
|
||||||
|
20.00 (mm) maximum height of pond water
|
||||||
|
-9999 (dimless) measured runoff curve number
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (g/cm3) bulk density
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at saturation
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at field capacity
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at wilting point
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at hygroscopic water content
|
||||||
|
|
||||||
|
EPC_FILE
|
||||||
|
c3grass_apriori_MuSo5.epc (filename) EPC file name
|
||||||
|
|
||||||
|
W_STATE
|
||||||
|
0.0 (kg/m2) water stored in snowpack
|
||||||
|
1.0 (DIM) initial soil water as a proportion of field capacity
|
||||||
|
|
||||||
|
CN_STATE
|
||||||
|
0.001 (kgC/m2) first-year maximum leaf carbon
|
||||||
|
0.001 (kgC/m2) first-year maximum fine root carbon
|
||||||
|
0.001 (kgC/m2) first-year maximum fruit carbon
|
||||||
|
0.001 (kgC/m2) first-year maximum softstem carbon
|
||||||
|
0.001 (kgC/m2) first-year maximum live woody stem carbon
|
||||||
|
0.001 (kgC/m2) first-year maximum live coarse root carbon
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) coarse woody debris carbon
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) litter carbon, labile pool
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) litter carbon, unshielded cellulose pool
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) litter carbon, shielded cellulose pool
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) litter carbon, lignin pool
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) soil carbon, fast microbial recycling pool
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) soil carbon, medium microbial recycling pool
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) soil carbon, slow microbial recycling pool
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) soil carbon, recalcitrant SOM (slowest)
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgN/m2) litter nitrogen, labile pool
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgN/m2) soil mineralized nitrogen, NH4 pool
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgN/m2) soil mineralized nitrogen, NO3 pool
|
||||||
|
|
||||||
|
OUTPUT_CONTROL
|
||||||
|
hhs_apriori_MuSo5 (filename) output prefix
|
||||||
|
1 (flag) writing daily output (0 = no; 1 = binary; 2 = ascii)
|
||||||
|
0 (flag) writing monthly average of daily output (0 = no; 1 = binary; 2 = ascii)
|
||||||
|
0 (flag) writing annual average of daily output (0 = no; 1 = binary; 2 = ascii)
|
||||||
|
2 (flag) writing annual output (0 = no; 1 = binary; 2 = ascii)
|
||||||
|
1 (flag) for on-screen progress indicator
|
||||||
|
|
||||||
|
DAILY_OUTPUT
|
||||||
|
14 number of daily output variables
|
||||||
|
49 tsoil_2cm
|
||||||
|
52 tsoil_20cm
|
||||||
|
2599 vwc_2cm
|
||||||
|
2602 vwc_20cm
|
||||||
|
2751 m_soilstress
|
||||||
|
671 vegc_to_SNSC
|
||||||
|
171 evapotransp
|
||||||
|
2520 proj_LAI
|
||||||
|
407 STDBc_above
|
||||||
|
3004 daily_n2o
|
||||||
|
3008 daily_nbp
|
||||||
|
3009 daily_gpp
|
||||||
|
3014 daily_tr
|
||||||
|
2502 n_actphen
|
||||||
|
|
||||||
|
ANNUAL_OUTPUT
|
||||||
|
12 number of annual output variables
|
||||||
|
0 onday
|
||||||
|
1 offday
|
||||||
|
3000 annprcp
|
||||||
|
3001 anntavg
|
||||||
|
3002 annrunoff
|
||||||
|
2765 ytd_maxplai
|
||||||
|
3024 cum_nee
|
||||||
|
3033 cum_Closs_THN_w
|
||||||
|
3035 cum_Closs_MOW
|
||||||
|
3037 cum_yieldC_HRV
|
||||||
|
3059 NH4_top10
|
||||||
|
3060 NO3_top10
|
||||||
|
|
||||||
|
-------------------
|
||||||
|
MANAGEMENT_SECTION
|
||||||
|
-------------------
|
||||||
|
PLANTING
|
||||||
|
0 (flag) do PLANTING? 0=no; 1=yes; filepath=reading from file
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (yday) PLANTING day
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m) germination depth
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (n/m2) number of seedlings
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (g/1000n) weight of 1000-seed
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) C content of seed
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) emergence rate
|
||||||
|
|
||||||
|
THINNING
|
||||||
|
0 (flag) do THINNING? 0=no; 1=yes; filepath=reading from file
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (yday) THINNING day
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (prop) thinning rate of woody plant material
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (prop) thinning rate of non-woody plant material
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) transported part of stem
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) transported part of leaf
|
||||||
|
|
||||||
|
MOWING
|
||||||
|
mowing_hhs_2007-2015.txt (flag) do MOWING? 0=no; 1=yes; filepath=reading from file
|
||||||
|
0 (flag) mowing method? 0 - fixday method, 1 - fixvalue method
|
||||||
|
-9999 (m2/m2) fixed value of the LAI before MOWING (fixvalue method)
|
||||||
|
-9999 (m2/m2) fixed value of the LAI after MOWING (fixvalue method)
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (yday) MOWING day
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m2/m2) value of the LAI after MOWING (fixday method)
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) transported part of plant material
|
||||||
|
|
||||||
|
GRAZING
|
||||||
|
0 (flag) do GRAZING? 0=no, 1=yes; filepath=reading from file
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (yday) first day of GRAZING
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (yday) last day of GRAZING
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kg/LSU) weight equivalent of one unit
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (LSU/ha) animal stocking rate: Livestock Units per hectare
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kg dry matter/LSU) daily ingested dry matter
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (prop) trampling effect (standing dead biome to litter)
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) ratio of DM intake formed excrement
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) ratio of excrement returning to litter
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) carbon content of dry matter
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) N content of manure
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) C content of manure
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgN2O-N:kgN) manure emission factor for direct N2O (T10.21)
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgN/1000 kg animal mass/day) default N excretion rate (T10.19)
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgCH4/LSU/yr*) manure emission factor for CH4 (T10.14)
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgCH4/LSU/yr*) fermentation emission factor for CH4 (T10.11)
|
||||||
|
|
||||||
|
HARVESTING
|
||||||
|
0 (flag) do HARVESTING? 0=no, 1=yes; filepath=reading from file
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (yday) HARVESTING day
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgC/m2) soft stem C content after HARVESTING
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) transported part of plant material
|
||||||
|
|
||||||
|
PLOUGHING
|
||||||
|
0 (flag) do PLOUGHING? 0=no, 1=yes; filepath=reading from file
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (yday) PLOUGHING day
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m) PLOUGHING depth
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (prop) dissolving coefficient of ploughed biome to litter
|
||||||
|
|
||||||
|
FERTILIZING
|
||||||
|
0 (flag) do FERTILIZING? 0=no, 1=yes; filepath=reading from file
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (yday) FERTILIZING day
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m) fertilizing depth
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgN fertilizer/ha/day) amount of fertilizer
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) dry matter content of fertilizer
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgN/kg fertilizer) nitrate content of fertilizer
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgN/kg fertilizer) ammonium content of fertilizer
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgN/kg fertilizer) organic nitrogen content of fertilizer
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgC/kg fertilizer) organic carbon content of fertilizer
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) labile fraction of fertilizer
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) unshielded cellulose fraction of fertilizer
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) shielded cellulose fraction of fertilizer
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) lignin fraction of fertilizer
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgN2O-N:kgN) emission factor for N-additions
|
||||||
|
|
||||||
|
IRRIGATION
|
||||||
|
0 (flag) do IRRIGATION? 0=no, 1=yes; filepath=reading from file
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (yday) IRRIGATION day
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgH2O/m2/day) amount of water
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) utilization coefficient of water
|
||||||
|
|
||||||
|
END_INIT
|
||||||
204
RBBGCMuso/inst/examples/hegyhatsal/s.ini
Normal file
204
RBBGCMuso/inst/examples/hegyhatsal/s.ini
Normal file
@ -0,0 +1,204 @@
|
|||||||
|
BBGC_MuSo simulation (missing data: -9999)
|
||||||
|
|
||||||
|
MET_INPUT
|
||||||
|
hhs_1961-2014.mtc43 (filename) met file name
|
||||||
|
4 (int) number of header lines in met file
|
||||||
|
365 (int) number of simdays in last simyear (truncated year: < 365)
|
||||||
|
|
||||||
|
RESTART
|
||||||
|
0 (flag) 1 = read restart; 0 = dont read restart
|
||||||
|
1 (flag) 1 = write restart; 0 = dont write restart
|
||||||
|
0 (flag) 1 = use restart metyear; 0 = reset metyear
|
||||||
|
hhs_apriori_MuSo5.endpoint (filename) name of the input restart file
|
||||||
|
hhs_apriori_MuSo5.endpoint (filename) name of the output restart file
|
||||||
|
|
||||||
|
TIME_DEFINE
|
||||||
|
54 (int) number of meteorological data years
|
||||||
|
54 (int) number of simulation years
|
||||||
|
1961 (int) first simulation year
|
||||||
|
1 (flag) 1 = spinup run; 0 = normal run
|
||||||
|
6000 (int) maximum number of spinup years
|
||||||
|
|
||||||
|
CLIM_CHANGE
|
||||||
|
0.0 (degC) - offset for Tmax
|
||||||
|
0.0 (degC) - offset for Tmin
|
||||||
|
1.0 (degC) - multiplier for PRCP
|
||||||
|
1.0 (degC) - multiplier for VPD
|
||||||
|
1.0 (degC) - multiplier for RAD
|
||||||
|
|
||||||
|
CO2_CONTROL
|
||||||
|
1 (flag) 0=constant; 1=vary with file
|
||||||
|
290.0 (ppm) constant atmospheric CO2 concentration
|
||||||
|
CO2_from1961.txt (filename) name of the CO2 file
|
||||||
|
|
||||||
|
NDEP_CONTROL
|
||||||
|
1 (flag) 0=constant; 1=vary with file
|
||||||
|
0.000200 (kgN/m2/yr) wet+dry atmospheric deposition of N
|
||||||
|
Ndep_from1961.txt (filename) name of the N-dep file
|
||||||
|
|
||||||
|
SITE
|
||||||
|
30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 (%) sand percentage by volume in rock-free soil
|
||||||
|
50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 (%) silt percentage by volume in rock-free soil
|
||||||
|
7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 (dimless) soil pH
|
||||||
|
248.0 (m) site elevation
|
||||||
|
46.95 (degrees) site latitude (- for S.Hem.)
|
||||||
|
0.20 (DIM) site shortwave albedo
|
||||||
|
9.00 (Celsius) mean annual air temperature
|
||||||
|
10.15 (Celsius) mean annual air temperature range
|
||||||
|
20.00 (mm) maximum height of pond water
|
||||||
|
-9999 (dimless) measured runoff curve number
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (g/cm3) bulk density
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at saturation
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at field capacity
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at wilting point
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at hygroscopic water content
|
||||||
|
|
||||||
|
EPC_FILE
|
||||||
|
c3grass_apriori_MuSo5.epc (filename) EPC file name
|
||||||
|
|
||||||
|
W_STATE
|
||||||
|
0.0 (kg/m2) water stored in snowpack
|
||||||
|
1.0 (DIM) initial soil water as a proportion of field capacity
|
||||||
|
|
||||||
|
CN_STATE
|
||||||
|
0.001 (kgC/m2) first-year maximum leaf carbon
|
||||||
|
0.001 (kgC/m2) first-year maximum fine root carbon
|
||||||
|
0.001 (kgC/m2) first-year maximum fruit carbon
|
||||||
|
0.001 (kgC/m2) first-year maximum softstem carbon
|
||||||
|
0.001 (kgC/m2) first-year maximum live woody stem carbon
|
||||||
|
0.001 (kgC/m2) first-year maximum live coarse root carbon
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) coarse woody debris carbon
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) litter carbon, labile pool
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) litter carbon, unshielded cellulose pool
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) litter carbon, shielded cellulose pool
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) litter carbon, lignin pool
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) soil carbon, fast microbial recycling pool
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) soil carbon, medium microbial recycling pool
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) soil carbon, slow microbial recycling pool
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgC/m2) soil carbon, recalcitrant SOM (slowest)
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgN/m2) litter nitrogen, labile pool
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgN/m2) soil mineralized nitrogen, NH4 pool
|
||||||
|
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgN/m2) soil mineralized nitrogen, NO3 pool
|
||||||
|
|
||||||
|
OUTPUT_CONTROL
|
||||||
|
hhs_apriori_MuSo5_S (filename) output prefix
|
||||||
|
0 (flag) writing daily output (0 = no; 1 = binary; 2 = ascii)
|
||||||
|
0 (flag) writing monthly average of daily output (0 = no; 1 = binary; 2 = ascii)
|
||||||
|
0 (flag) writing annual average of daily output (0 = no; 1 = binary; 2 = ascii)
|
||||||
|
0 (flag) writing annual output (0 = no; 1 = binary; 2 = ascii)
|
||||||
|
1 (flag) for on-screen progress indicator
|
||||||
|
|
||||||
|
DAILY_OUTPUT
|
||||||
|
14 number of daily output variables
|
||||||
|
49 tsoil_2cm
|
||||||
|
52 tsoil_20cm
|
||||||
|
2599 vwc_2cm
|
||||||
|
2602 vwc_20cm
|
||||||
|
2751 m_soilstress
|
||||||
|
671 vegc_to_SNSC
|
||||||
|
171 evapotransp
|
||||||
|
2520 proj_LAI
|
||||||
|
407 STDBc_above
|
||||||
|
3004 daily_n2o
|
||||||
|
3008 daily_nbp
|
||||||
|
3009 daily_gpp
|
||||||
|
3014 daily_tr
|
||||||
|
2502 n_actphen
|
||||||
|
|
||||||
|
ANNUAL_OUTPUT
|
||||||
|
12 number of annual output variables
|
||||||
|
0 onday
|
||||||
|
1 offday
|
||||||
|
3000 annprcp
|
||||||
|
3001 anntavg
|
||||||
|
3002 annrunoff
|
||||||
|
2765 ytd_maxplai
|
||||||
|
3024 cum_nee
|
||||||
|
3033 cum_Closs_THN_w
|
||||||
|
3035 cum_Closs_MOW
|
||||||
|
3037 cum_yieldC_HRV
|
||||||
|
3059 NH4_top10
|
||||||
|
3060 NO3_top10
|
||||||
|
|
||||||
|
-------------------
|
||||||
|
MANAGEMENT_SECTION
|
||||||
|
-------------------
|
||||||
|
PLANTING
|
||||||
|
0 (flag) do PLANTING? 0=no; 1=yes; filepath=reading from file
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (yday) PLANTING day
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m) germination depth
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (n/m2) number of seedlings
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (g/1000n) weight of 1000-seed
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) C content of seed
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) emergence rate
|
||||||
|
|
||||||
|
THINNING
|
||||||
|
0 (flag) do THINNING? 0=no; 1=yes; filepath=reading from file
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (yday) THINNING day
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (prop) thinning rate of woody plant material
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (prop) thinning rate of non-woody plant material
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) transported part of stem
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) transported part of leaf
|
||||||
|
|
||||||
|
MOWING
|
||||||
|
0 (flag) do MOWING? 0=no; 1=yes; filepath=reading from file
|
||||||
|
0 (flag) mowing method? 0 - fixday method, 1 - fixvalue method
|
||||||
|
-9999 (m2/m2) fixed value of the LAI before MOWING (fixvalue method)
|
||||||
|
-9999 (m2/m2) fixed value of the LAI after MOWING (fixvalue method)
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (yday) MOWING day
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m2/m2) value of the LAI after MOWING (fixday method)
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) transported part of plant material
|
||||||
|
|
||||||
|
GRAZING
|
||||||
|
0 (flag) do GRAZING? 0=no, 1=yes; filepath=reading from file
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (yday) first day of GRAZING
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (yday) last day of GRAZING
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kg/LSU) weight equivalent of one unit
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (LSU/ha) animal stocking rate: Livestock Units per hectare
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kg dry matter/LSU) daily ingested dry matter
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (prop) trampling effect (standing dead biome to litter)
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) ratio of DM intake formed excrement
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) ratio of excrement returning to litter
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) carbon content of dry matter
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) N content of manure
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) C content of manure
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgN2O-N:kgN) manure emission factor for direct N2O (T10.21)
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgN/1000 kg animal mass/day) default N excretion rate (T10.19)
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgCH4/LSU/yr*) manure emission factor for CH4 (T10.14)
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgCH4/LSU/yr*) fermentation emission factor for CH4 (T10.11)
|
||||||
|
|
||||||
|
HARVESTING
|
||||||
|
0 (flag) do HARVESTING? 0=no, 1=yes; filepath=reading from file
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (yday) HARVESTING day
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgC/m2) soft stem C content after HARVESTING
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) transported part of plant material
|
||||||
|
|
||||||
|
PLOUGHING
|
||||||
|
0 (flag) do PLOUGHING? 0=no, 1=yes; filepath=reading from file
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (yday) PLOUGHING day
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m) PLOUGHING depth
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (prop) dissolving coefficient of ploughed biome to litter
|
||||||
|
|
||||||
|
FERTILIZING
|
||||||
|
0 (flag) do FERTILIZING? 0=no, 1=yes; filepath=reading from file
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (yday) FERTILIZING day
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m) fertilizing depth
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgN fertilizer/ha/day) amount of fertilizer
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) dry matter content of fertilizer
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgN/kg fertilizer) nitrate content of fertilizer
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgN/kg fertilizer) ammonium content of fertilizer
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgN/kg fertilizer) organic nitrogen content of fertilizer
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgC/kg fertilizer) organic carbon content of fertilizer
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) labile fraction of fertilizer
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) unshielded cellulose fraction of fertilizer
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) shielded cellulose fraction of fertilizer
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) lignin fraction of fertilizer
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgN2O-N:kgN) emission factor for N-additions
|
||||||
|
|
||||||
|
IRRIGATION
|
||||||
|
0 (flag) do IRRIGATION? 0=no, 1=yes; filepath=reading from file
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (yday) IRRIGATION day
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (kgH2O/m2/day) amount of water
|
||||||
|
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (%) utilization coefficient of water
|
||||||
|
|
||||||
|
END_INIT
|
||||||
17
RBBGCMuso/man/copyMusoExamleTo.Rd
Normal file
17
RBBGCMuso/man/copyMusoExamleTo.Rd
Normal file
@ -0,0 +1,17 @@
|
|||||||
|
% Generated by roxygen2: do not edit by hand
|
||||||
|
% Please edit documentation in R/musoExamples.R
|
||||||
|
\name{copyMusoExamleTo}
|
||||||
|
\alias{copyMusoExamleTo}
|
||||||
|
\title{copyMusoExampleTo}
|
||||||
|
\usage{
|
||||||
|
copyMusoExamleTo(example = NULL, destination = NULL)
|
||||||
|
}
|
||||||
|
\arguments{
|
||||||
|
\item{example}{The name of the example file, if it is NULL tcl/tk menu will pop up to select.}
|
||||||
|
}
|
||||||
|
\value{
|
||||||
|
List of two matrices: A and B matrix for musoRandomizer
|
||||||
|
}
|
||||||
|
\description{
|
||||||
|
With this function you can copy RBBGCMuso example library whereever you want
|
||||||
|
}
|
||||||
Loading…
Reference in New Issue
Block a user