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fixing musoSensi bug

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This commit is contained in:
Roland Hollós 2019-11-18 19:04:34 +01:00
parent d90a29f017
commit 648e47f85c
7 changed files with 732 additions and 106 deletions
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8
RBBGCMuso/R/musoMonte.R
View File

@ -85,7 +85,8 @@ musoMonte <- function(settings=NULL,
outVarNames <- sapply(outVars, musoMapping)
}
parameterNames <- parameters[,1]
parameterNames <- gsub("([\\s]|\\-epc)","",parameters[,1],perl=TRUE)
# settings$calibrationPar <- A[,1] #:LATER:
pretag <- file.path(outLoc,preTag)
npar <- length(settings$calibrationPar)
@ -121,6 +122,7 @@ musoMonte <- function(settings=NULL,
## randValues <- randValues[,randVals[[1]] %in% parameters[,2]][,rank(parameters[,2])]
modellOut <- matrix(ncol = numVars, nrow = iterations + 1)
origModellOut <- calibMuso(settings=settings,silent=TRUE)
write.csv(x=origModellOut, file=paste0(pretag,1,".csv"))
@ -165,8 +167,10 @@ musoMonte <- function(settings=NULL,
paramLines <- order(paramLines)
randInd <- randVals[[1]][(randVals[[1]] %in% parameters[,2])]
randInd <- order(randInd)
# browser()
epcStrip <- rbind(origEpc[order(parameters[,2])],
randValues[,randVals[[1]] %in% parameters[,2]][,randInd])

3
RBBGCMuso/R/musoRand.R
View File

@ -20,6 +20,7 @@ musoRand <- function(parameters, iterations=3000, fileType="epc", constrains = N
constMatrix <- constMatrix[,-1]
depTableMaker <- function(constMatrix,parameters){
# browser()
parameters <- parameters[order(parameters[,1]),] ## BUG!!!
selectedRows <- constMatrix[,"INDEX"] %in% parameters[,1]
rankList <- rank(constMatrix[selectedRows,2])
@ -174,7 +175,7 @@ musoRand <- function(parameters, iterations=3000, fileType="epc", constrains = N
h <- c(Gh0$h,h)
E <- do.call(rbind,lapply(Ef,function(x){x$E}))
f <- do.call(c,lapply(Ef,function(x){x$f}))
# browser()
# browser()
randVal <- suppressWarnings(limSolve::xsample(G=G,H=h,E=E,F=f,iter = iterations))$X
} else{
Gh0<-genMat0(dependences)

4
RBBGCMuso/R/musoSensi.R
View File

@ -42,9 +42,9 @@ musoSensi <- function(monteCarloFile = NULL,
stop("Cannot find neither parameters file neither the parameters matrix")
})
}}
parameters[,1] <- gsub("([\\s]|\\-epc)","",parameters[,1],perl=TRUE)
doSensi <- function(M){
browser()
# browser()
npar <- ncol(M)-1
M <- M[which(!is.na(M[,ncol(M)])),]
y <- M[,(npar+1)]

183
RBBGCMuso/inst/data/constMatrix.csv Normal file
View File

@ -0,0 +1,183 @@
"","X","NAME","INDEX","UNIT","MIN","MAX","GROUP","TYPE","DEPENDENCE"
"1",1,"yearday to start new growth",9,"yday",0,364,0,0,NA
"2",2,"yearday to end new growth",10,"yday",0,364,0,0,NA
"3",3,"transfer growth period as fraction of growing season",11,"prop",0,1,0,0,NA
"4",4,"litterfall as fraction of growing season",12,"prop",0,1,0,0,NA
"5",5,"base temperature",13,"Celsius",0,12,0,0,NA
"6",6,"minimum temperature for growth displayed on current day",14,"Celsius",0,10,1,1,0
"7",7,"optimal1 temperature for growth displayed on current day",15,"Celsius",10,20,1,1,1
"8",8,"optimal2 temperature for growth displayed on current day",16,"Celsius",20,40,1,1,2
"9",9,"maxmimum temperature for growth displayed on current day",17,"Celsius",30,50,1,1,3
"10",10,"minimum temperature for carbon assimilation displayed on current day",18,"Celsius",0,10,2,1,0
"11",11,"optimal1 temperature for carbon assimilation displayed on current day",19,"Celsius",10,20,2,1,1
"12",12,"optimal2 temperature for carbon assimilation displayed on current day",20,"Celsius",20,40,2,1,2
"13",13,"maxmimum temperature for carbon assimilation displayed on current day",21,"Celsius",30,50,2,1,3
"14",14,"annual leaf and fine root turnover fraction",22,"1/yr",0.1,0.4,0,0,NA
"15",15,"annual live wood turnover fraction",23,"1/yr",0.5,1,0,0,NA
"16",16,"annual fire mortality fraction",24,"1/yr",0,1,0,0,NA
"17",17,"whole-plant mortality paramter for vegetation period",25,"1/vegper",0,0.5,0,0,NA
"18",18,"C:N of leaves",26,"kgC/kgN",10,100,3,1,0
"19",19,"C:N of leaf litter",27,"kgC/kgN",10,60,3,1,1
"20",20,"C:N of fine roots",28,"kgC/kgN",10,60,3,1,1
"21",21,"C:N of fruit",29,"kgC/kgN",10,60,3,1,1
"22",22,"C:N of softstem",30,"kgC/kgN",10,60,3,1,1
"23",23,"C:N of live wood",31,"kgC/kgN",50,100,4,1,0
"24",24,"C:N of dead wood",32,"kgC/kgN",300,800,4,1,1
"25",25,"dry matter content of leaves",33,"kgC/kgDM",0.2,0.6,0,0,NA
"26",26,"dry matter content of leaf litter",34,"kgC/kgDM",0.2,0.6,0,0,NA
"27",27,"dry matter content of fine roots",35,"kgC/kgDM",0.2,0.6,0,0,NA
"28",28,"dry matter content of fruit",36,"kgC/kgDM",0.2,0.6,0,0,NA
"29",29,"dry matter content of softstem",37,"kgC/kgDM",0.2,0.6,0,0,NA
"30",30,"dry matter content of live wood",38,"kgC/kgDM",0.2,0.6,0,0,NA
"31",31,"dry matter content of dead wood",39,"kgC/kgDM",0.2,0.6,0,0,NA
"32",32,"leaf litter labile proportion",40,"prop",0.1,0.6,5,2,1
"33",33,"leaf litter cellulose proportion",41,"prop",0.1,0.6,5,2,1
"34",34,"fine root labile proportion",42,"prop",0.1,0.6,6,2,1
"35",35,"fine root cellulose proportion",43,"prop",0.1,0.6,6,2,1
"36",36,"fruit labile proportion",44,"prop",0.1,0.6,7,2,1
"37",37,"fruit cellulose proportion",45,"prop",0.1,0.6,7,2,1
"38",38,"softstem labile proportion",46,"prop",0.1,0.6,8,2,1
"39",39,"softstem cellulose proportion",47,"prop",0.1,0.6,8,2,1
"40",40,"dead wood cellulose proportion",48,"prop",0.5,0.9,0,0,NA
"41",41,"canopy water interception coefficient",49,"1/LAI/d",0.01,0.1,0,0,NA
"42",42,"canopy light extinction coefficient",50,"dimless",0.2,0.8,0,0,NA
"43",43,"potential radiation use efficiency",51,"g/MJ",2,2,0,0,NA
"44",44,"radiation parameter1 (Jiang et al.2015)",52,"dimless",0.781,0.781,0,0,NA
"45",45,"radiation parameter1 (Jiang et al.2015)",53,"dimless",-13.596,-13.596,0,0,NA
"46",46,"all-sided to projected leaf area ratio",54,"dimless",2,2,0,0,NA
"47",47,"ratio of shaded SLA:sunlit SLA",55,"dimless",2,2,0,0,NA
"48",48,"fraction of leaf N in Rubisco",56,"dimless",0.01,0.2,0,0,NA
"49",49,"fraction of leaf N in PeP",57,"dimless",0.0424,0.0424,0,0,NA
"50",50,"maximum stomatal conductance ",58,"m/s",0.001,0.1,0,0,NA
"51",51,"cuticular conductance ",59,"m/s",1e-05,1e-04,0,0,NA
"52",52,"boundary layer conductance",60,"m/s",0.01,0.09,0,0,NA
"53",53,"maximum height of plant",61,"m",0.1,10,0,0,NA
"54",54,"stem weight corresponding to maximum height",62,"kgC",0.1,100,0,0,NA
"55",55,"plant height function shape parameter (slope)",63,"dimless",0.5,0.5,0,0,NA
"56",56,"maximum depth of rooting zone",64,"m",0.1,10,0,0,NA
"57",57,"root distribution parameter",65,"prop",3.67,3.67,0,0,NA
"58",58,"root weight corresponding to max root depth",66,"kgC/m2",0.4,0.4,0,0,NA
"59",59,"root depth function shape parameter (slope)",67,"prop",0.5,0.5,0,0,NA
"60",60,"root weight to rooth length conversion factor",68,"m/kg",1000,1000,0,0,NA
"61",61,"growth resp per unit of C grown",69,"prop",0.1,0.5,0,0,NA
"62",62,"maintenance respiration in kgC/day per kg of tissue N ",70,"kgC/kgN/d",0.1,0.5,0,0,NA
"63",63,"theoretical maximum prop. of non-structural and structural carbohydrates",71,"dimless",0,1,0,0,NA
"64",64,"prop. of non-structural carbohydrates available for maintanance resp",72,"dimless",0,1,0,0,NA
"65",65,"symbiotic+asymbiotic fixation of N",73,"kgN/m2/yr",0,0.001,0,0,NA
"66",66,"time delay for temperature in photosynthesis acclimation",74,"day",0,50,0,0,NA
"67",67,"critical VWCratio (prop. to FC-WP) in germination",79,"prop",0,1,0,0,NA
"68",68,"critical photoslow daylength",81,"hour",14,18,0,0,NA
"69",69,"slope of relative photoslow development rate ",82,"dimless",0.005,0.005,0,0,NA
"70",70,"critical vernalization temperature 1",84,"Celsius",-5,5,9,1,0
"71",71,"critical vernalization temperature 2",85,"Celsius",0,10,9,1,1
"72",72,"critical vernalization temperature 3",86,"Celsius",5,15,9,1,2
"73",73,"critical vernalization temperature 4",87,"Celsius",10,20,9,1,3
"74",74,"slope of relative vernalization development rate ",88,"dimless",0.04,0.04,0,0,NA
"75",75,"required vernalization days (in vernalization development rate)",89,"dimless",30,70,0,0,NA
"76",76,"critical flowering heat stress temperature 1",91,"Celsius",30,40,10,1,0
"77",77,"critical flowering heat stress temperature 2",92,"Celsius",30,50,10,1,1
"78",78,"theoretical maximum of flowering thermal stress mortality",93,"prop",0,0.4,0,0,NA
"79",79,"VWC ratio to calc. soil moisture limit 1 (prop. to FC-WP)",96,"prop",0.5,1,0,0,NA
"80",80,"VWC ratio to calc. soil moisture limit 2 (prop. to SAT-FC)",97,"prop",0.5,1,0,0,NA
"81",81,"minimum of soil moisture limit2 multiplicator (full anoxic stress value)",98,"prop",0,1,0,0,NA
"82",82,"vapor pressure deficit: start of conductance reduction",99,"Pa",500,1500,0,0,NA
"83",83,"vapor pressure deficit: complete conductance reduction",100,"Pa",1500,3500,0,0,NA
"84",84,"maximum senescence mortality coefficient of aboveground plant material",101,"prop",0,0.1,0,0,NA
"85",85,"maximum senescence mortality coefficient of belowground plant material",102,"prop",0,0.1,0,0,NA
"86",86,"maximum senescence mortality coefficient of non-structured plant material",103,"prop",0,0.1,0,0,NA
"87",87,"lower limit extreme high temperature effect on senescence mortality",104,"Celsius",30,40,0,0,NA
"88",88,"upper limit extreme high temperature effect on senescence mortality",105,"Celsius",30,50,0,0,NA
"89",89,"turnover rate of wilted standing biomass to litter",106,"prop",0,0.1,0,0,NA
"90",90,"turnover rate of cut-down non-woody biomass to litter",107,"prop",0,0.1,0,0,NA
"91",91,"turnover rate of cut-down woody biomass to litter",108,"prop",0,0.1,0,0,NA
"92",92,"drought tolerance parameter (critical value of day since water stress)",109,"n_day",0,100,0,0,NA
"93",93,"crit. amount of snow limiting photosyn.",112,"kg/m2",0,20,0,0,NA
"94",94,"limit1 (under:full constrained) of HEATSUM index",113,"Celsius",0,50,11,1,0
"95",95,"limit2 (above:unconstrained) of HEATSUM index",114,"Celsius",0,100,11,1,1
"96",96,"limit1 (under:full constrained) of TMIN index",115,"Celsius",-5,5,12,1,0
"97",97,"limit2 (above:unconstrained) of TMIN index",116,"Celsius",0,10,12,1,1
"98",98,"limit1 (above:full constrained) of VPD index",117,"Pa",2000,600,13,1,0
"99",99,"limit2 (under:unconstrained) of VPD index",118,"Pa",500,1500,13,1,1
"100",100,"limit1 (under:full constrained) of DAYLENGTH index",119,"s",0,0,14,1,0
"101",101,"limit2 (above:unconstrained) of DAYLENGTH index",120,"s",0,0,14,1,1
"102",102,"moving average (to avoid the effects of extreme events)",121,"n_day",2,20,0,0,NA
"103",103,"GSI limit1 (greater that limit -> start of vegper)",122,"dimless",0,0.2,0,0,NA
"104",104,"GSI limit2 (less that limit -> end of vegper)",123,"dimless",0,0.1,0,0,NA
"105",105,"length of phenophase (GDD)",127,"Celsius",0,10000,0,0,NA
"106",106,"leaf ALLOCATION -0",128.6,"prop",0,1,15,-3,1
"107",107,"fine root ALLOCATION-0",129.6,"prop",0,1,15,-3,1
"108",108,"fruit ALLOCATION -0",130.6,"prop",0,1,15,-3,1
"109",109,"soft stem ALLOCATION-0",131.6,"prop",0,1,15,-3,1
"110",110,"live woody stem ALLOCATION -0",132.6,"prop",0,1,15,-3,1
"111",111,"dead woody stem ALLOCATION -0",133.6,"prop",0,1,15,-3,1
"112",112,"live coarse root ALLOCATION-0",134.6,"prop",0,1,15,-3,1
"113",113,"dead coarse root ALLOCATION -0",135.6,"prop",0,1,15,-3,1
"114",114,"canopy average specific leaf area-0",136.6,"m2/kg",0,2,0,0,NA
"115",115,"current growth proportion-0",137.6,"prop",0,0,0,0,NA
"116",116,"maximal lifetime of plant tissue-0",138.6,"Celsius",1,20000,0,0,NA
"117",106,"leaf ALLOCATION -1",128.61,"prop",0,1,16,-3,1
"118",107,"fine root ALLOCATION-1",129.61,"prop",0,1,16,-3,1
"119",108,"fruit ALLOCATION -1",130.61,"prop",0,1,16,-3,1
"120",109,"soft stem ALLOCATION-1",131.61,"prop",0,1,16,-3,1
"121",110,"live woody stem ALLOCATION -1",132.61,"prop",0,1,16,-3,1
"122",111,"dead woody stem ALLOCATION -1",133.61,"prop",0,1,16,-3,1
"123",112,"live coarse root ALLOCATION-1",134.61,"prop",0,1,16,-3,1
"124",113,"dead coarse root ALLOCATION -1",135.61,"prop",0,1,16,-3,1
"125",114,"canopy average specific leaf area-1",136.61,"m2/kg",0,2,0,0,NA
"126",115,"current growth proportion-1",137.61,"prop",0,0,0,0,NA
"127",116,"maximal lifetime of plant tissue-1",138.61,"Celsius",1,20000,0,0,NA
"128",106,"leaf ALLOCATION -2",128.62,"prop",0,1,17,-3,1
"129",107,"fine root ALLOCATION-2",129.62,"prop",0,1,17,-3,1
"130",108,"fruit ALLOCATION -2",130.62,"prop",0,1,17,-3,1
"131",109,"soft stem ALLOCATION-2",131.62,"prop",0,1,17,-3,1
"132",110,"live woody stem ALLOCATION -2",132.62,"prop",0,1,17,-3,1
"133",111,"dead woody stem ALLOCATION -2",133.62,"prop",0,1,17,-3,1
"134",112,"live coarse root ALLOCATION-2",134.62,"prop",0,1,17,-3,1
"135",113,"dead coarse root ALLOCATION -2",135.62,"prop",0,1,17,-3,1
"136",114,"canopy average specific leaf area-2",136.62,"m2/kg",0,2,0,0,NA
"137",115,"current growth proportion-2",137.62,"prop",0,0,0,0,NA
"138",116,"maximal lifetime of plant tissue-2",138.62,"Celsius",1,20000,0,0,NA
"139",106,"leaf ALLOCATION -3",128.63,"prop",0,1,18,-3,1
"140",107,"fine root ALLOCATION-3",129.63,"prop",0,1,18,-3,1
"141",108,"fruit ALLOCATION -3",130.63,"prop",0,1,18,-3,1
"142",109,"soft stem ALLOCATION-3",131.63,"prop",0,1,18,-3,1
"143",110,"live woody stem ALLOCATION -3",132.63,"prop",0,1,18,-3,1
"144",111,"dead woody stem ALLOCATION -3",133.63,"prop",0,1,18,-3,1
"145",112,"live coarse root ALLOCATION-3",134.63,"prop",0,1,18,-3,1
"146",113,"dead coarse root ALLOCATION -3",135.63,"prop",0,1,18,-3,1
"147",114,"canopy average specific leaf area-3",136.63,"m2/kg",0,2,0,0,NA
"148",115,"current growth proportion-3",137.63,"prop",0,0,0,0,NA
"149",116,"maximal lifetime of plant tissue-3",138.63,"Celsius",1,20000,0,0,NA
"150",106,"leaf ALLOCATION -4",128.64,"prop",0,1,19,-3,1
"151",107,"fine root ALLOCATION-4",129.64,"prop",0,1,19,-3,1
"152",108,"fruit ALLOCATION -4",130.64,"prop",0,1,19,-3,1
"153",109,"soft stem ALLOCATION-4",131.64,"prop",0,1,19,-3,1
"154",110,"live woody stem ALLOCATION -4",132.64,"prop",0,1,19,-3,1
"155",111,"dead woody stem ALLOCATION -4",133.64,"prop",0,1,19,-3,1
"156",112,"live coarse root ALLOCATION-4",134.64,"prop",0,1,19,-3,1
"157",113,"dead coarse root ALLOCATION -4",135.64,"prop",0,1,19,-3,1
"158",114,"canopy average specific leaf area-4",136.64,"m2/kg",0,2,0,0,NA
"159",115,"current growth proportion-4",137.64,"prop",0,0,0,0,NA
"160",116,"maximal lifetime of plant tissue-4",138.64,"Celsius",1,20000,0,0,NA
"161",106,"leaf ALLOCATION -5",128.65,"prop",0,1,20,-3,1
"162",107,"fine root ALLOCATION-5",129.65,"prop",0,1,20,-3,1
"163",108,"fruit ALLOCATION -5",130.65,"prop",0,1,20,-3,1
"164",109,"soft stem ALLOCATION-5",131.65,"prop",0,1,20,-3,1
"165",110,"live woody stem ALLOCATION -5",132.65,"prop",0,1,20,-3,1
"166",111,"dead woody stem ALLOCATION -5",133.65,"prop",0,1,20,-3,1
"167",112,"live coarse root ALLOCATION-5",134.65,"prop",0,1,20,-3,1
"168",113,"dead coarse root ALLOCATION -5",135.65,"prop",0,1,20,-3,1
"169",114,"canopy average specific leaf area-5",136.65,"m2/kg",0,2,0,0,NA
"170",115,"current growth proportion-5",137.65,"prop",0,0,0,0,NA
"171",116,"maximal lifetime of plant tissue-5",138.65,"Celsius",1,20000,0,0,NA
"172",106,"leaf ALLOCATION -6",128.66,"prop",0,1,21,-3,1
"173",107,"fine root ALLOCATION-6",129.66,"prop",0,1,21,-3,1
"174",108,"fruit ALLOCATION -6",130.66,"prop",0,1,21,-3,1
"175",109,"soft stem ALLOCATION-6",131.66,"prop",0,1,21,-3,1
"176",110,"live woody stem ALLOCATION -6",132.66,"prop",0,1,21,-3,1
"177",111,"dead woody stem ALLOCATION -6",133.66,"prop",0,1,21,-3,1
"178",112,"live coarse root ALLOCATION-6",134.66,"prop",0,1,21,-3,1
"179",113,"dead coarse root ALLOCATION -6",135.66,"prop",0,1,21,-3,1
"180",114,"canopy average specific leaf area-6",136.66,"m2/kg",0,2,0,0,NA
"181",115,"current growth proportion-6",137.66,"prop",0,0,0,0,NA
"182",116,"maximal lifetime of plant tissue-6",138.66,"Celsius",1,20000,0,0,NA
1 X NAME INDEX UNIT MIN MAX GROUP TYPE DEPENDENCE
2 1 1 yearday to start new growth 9 yday 0 364 0 0 NA
3 2 2 yearday to end new growth 10 yday 0 364 0 0 NA
4 3 3 transfer growth period as fraction of growing season 11 prop 0 1 0 0 NA
5 4 4 litterfall as fraction of growing season 12 prop 0 1 0 0 NA
6 5 5 base temperature 13 Celsius 0 12 0 0 NA
7 6 6 minimum temperature for growth displayed on current day 14 Celsius 0 10 1 1 0
8 7 7 optimal1 temperature for growth displayed on current day 15 Celsius 10 20 1 1 1
9 8 8 optimal2 temperature for growth displayed on current day 16 Celsius 20 40 1 1 2
10 9 9 maxmimum temperature for growth displayed on current day 17 Celsius 30 50 1 1 3
11 10 10 minimum temperature for carbon assimilation displayed on current day 18 Celsius 0 10 2 1 0
12 11 11 optimal1 temperature for carbon assimilation displayed on current day 19 Celsius 10 20 2 1 1
13 12 12 optimal2 temperature for carbon assimilation displayed on current day 20 Celsius 20 40 2 1 2
14 13 13 maxmimum temperature for carbon assimilation displayed on current day 21 Celsius 30 50 2 1 3
15 14 14 annual leaf and fine root turnover fraction 22 1/yr 0.1 0.4 0 0 NA
16 15 15 annual live wood turnover fraction 23 1/yr 0.5 1 0 0 NA
17 16 16 annual fire mortality fraction 24 1/yr 0 1 0 0 NA
18 17 17 whole-plant mortality paramter for vegetation period 25 1/vegper 0 0.5 0 0 NA
19 18 18 C:N of leaves 26 kgC/kgN 10 100 3 1 0
20 19 19 C:N of leaf litter 27 kgC/kgN 10 60 3 1 1
21 20 20 C:N of fine roots 28 kgC/kgN 10 60 3 1 1
22 21 21 C:N of fruit 29 kgC/kgN 10 60 3 1 1
23 22 22 C:N of softstem 30 kgC/kgN 10 60 3 1 1
24 23 23 C:N of live wood 31 kgC/kgN 50 100 4 1 0
25 24 24 C:N of dead wood 32 kgC/kgN 300 800 4 1 1
26 25 25 dry matter content of leaves 33 kgC/kgDM 0.2 0.6 0 0 NA
27 26 26 dry matter content of leaf litter 34 kgC/kgDM 0.2 0.6 0 0 NA
28 27 27 dry matter content of fine roots 35 kgC/kgDM 0.2 0.6 0 0 NA
29 28 28 dry matter content of fruit 36 kgC/kgDM 0.2 0.6 0 0 NA
30 29 29 dry matter content of softstem 37 kgC/kgDM 0.2 0.6 0 0 NA
31 30 30 dry matter content of live wood 38 kgC/kgDM 0.2 0.6 0 0 NA
32 31 31 dry matter content of dead wood 39 kgC/kgDM 0.2 0.6 0 0 NA
33 32 32 leaf litter labile proportion 40 prop 0.1 0.6 5 2 1
34 33 33 leaf litter cellulose proportion 41 prop 0.1 0.6 5 2 1
35 34 34 fine root labile proportion 42 prop 0.1 0.6 6 2 1
36 35 35 fine root cellulose proportion 43 prop 0.1 0.6 6 2 1
37 36 36 fruit labile proportion 44 prop 0.1 0.6 7 2 1
38 37 37 fruit cellulose proportion 45 prop 0.1 0.6 7 2 1
39 38 38 softstem labile proportion 46 prop 0.1 0.6 8 2 1
40 39 39 softstem cellulose proportion 47 prop 0.1 0.6 8 2 1
41 40 40 dead wood cellulose proportion 48 prop 0.5 0.9 0 0 NA
42 41 41 canopy water interception coefficient 49 1/LAI/d 0.01 0.1 0 0 NA
43 42 42 canopy light extinction coefficient 50 dimless 0.2 0.8 0 0 NA
44 43 43 potential radiation use efficiency 51 g/MJ 2 2 0 0 NA
45 44 44 radiation parameter1 (Jiang et al.2015) 52 dimless 0.781 0.781 0 0 NA
46 45 45 radiation parameter1 (Jiang et al.2015) 53 dimless -13.596 -13.596 0 0 NA
47 46 46 all-sided to projected leaf area ratio 54 dimless 2 2 0 0 NA
48 47 47 ratio of shaded SLA:sunlit SLA 55 dimless 2 2 0 0 NA
49 48 48 fraction of leaf N in Rubisco 56 dimless 0.01 0.2 0 0 NA
50 49 49 fraction of leaf N in PeP 57 dimless 0.0424 0.0424 0 0 NA
51 50 50 maximum stomatal conductance 58 m/s 0.001 0.1 0 0 NA
52 51 51 cuticular conductance 59 m/s 1e-05 1e-04 0 0 NA
53 52 52 boundary layer conductance 60 m/s 0.01 0.09 0 0 NA
54 53 53 maximum height of plant 61 m 0.1 10 0 0 NA
55 54 54 stem weight corresponding to maximum height 62 kgC 0.1 100 0 0 NA
56 55 55 plant height function shape parameter (slope) 63 dimless 0.5 0.5 0 0 NA
57 56 56 maximum depth of rooting zone 64 m 0.1 10 0 0 NA
58 57 57 root distribution parameter 65 prop 3.67 3.67 0 0 NA
59 58 58 root weight corresponding to max root depth 66 kgC/m2 0.4 0.4 0 0 NA
60 59 59 root depth function shape parameter (slope) 67 prop 0.5 0.5 0 0 NA
61 60 60 root weight to rooth length conversion factor 68 m/kg 1000 1000 0 0 NA
62 61 61 growth resp per unit of C grown 69 prop 0.1 0.5 0 0 NA
63 62 62 maintenance respiration in kgC/day per kg of tissue N 70 kgC/kgN/d 0.1 0.5 0 0 NA
64 63 63 theoretical maximum prop. of non-structural and structural carbohydrates 71 dimless 0 1 0 0 NA
65 64 64 prop. of non-structural carbohydrates available for maintanance resp 72 dimless 0 1 0 0 NA
66 65 65 symbiotic+asymbiotic fixation of N 73 kgN/m2/yr 0 0.001 0 0 NA
67 66 66 time delay for temperature in photosynthesis acclimation 74 day 0 50 0 0 NA
68 67 67 critical VWCratio (prop. to FC-WP) in germination 79 prop 0 1 0 0 NA
69 68 68 critical photoslow daylength 81 hour 14 18 0 0 NA
70 69 69 slope of relative photoslow development rate 82 dimless 0.005 0.005 0 0 NA
71 70 70 critical vernalization temperature 1 84 Celsius -5 5 9 1 0
72 71 71 critical vernalization temperature 2 85 Celsius 0 10 9 1 1
73 72 72 critical vernalization temperature 3 86 Celsius 5 15 9 1 2
74 73 73 critical vernalization temperature 4 87 Celsius 10 20 9 1 3
75 74 74 slope of relative vernalization development rate 88 dimless 0.04 0.04 0 0 NA
76 75 75 required vernalization days (in vernalization development rate) 89 dimless 30 70 0 0 NA
77 76 76 critical flowering heat stress temperature 1 91 Celsius 30 40 10 1 0
78 77 77 critical flowering heat stress temperature 2 92 Celsius 30 50 10 1 1
79 78 78 theoretical maximum of flowering thermal stress mortality 93 prop 0 0.4 0 0 NA
80 79 79 VWC ratio to calc. soil moisture limit 1 (prop. to FC-WP) 96 prop 0.5 1 0 0 NA
81 80 80 VWC ratio to calc. soil moisture limit 2 (prop. to SAT-FC) 97 prop 0.5 1 0 0 NA
82 81 81 minimum of soil moisture limit2 multiplicator (full anoxic stress value) 98 prop 0 1 0 0 NA
83 82 82 vapor pressure deficit: start of conductance reduction 99 Pa 500 1500 0 0 NA
84 83 83 vapor pressure deficit: complete conductance reduction 100 Pa 1500 3500 0 0 NA
85 84 84 maximum senescence mortality coefficient of aboveground plant material 101 prop 0 0.1 0 0 NA
86 85 85 maximum senescence mortality coefficient of belowground plant material 102 prop 0 0.1 0 0 NA
87 86 86 maximum senescence mortality coefficient of non-structured plant material 103 prop 0 0.1 0 0 NA
88 87 87 lower limit extreme high temperature effect on senescence mortality 104 Celsius 30 40 0 0 NA
89 88 88 upper limit extreme high temperature effect on senescence mortality 105 Celsius 30 50 0 0 NA
90 89 89 turnover rate of wilted standing biomass to litter 106 prop 0 0.1 0 0 NA
91 90 90 turnover rate of cut-down non-woody biomass to litter 107 prop 0 0.1 0 0 NA
92 91 91 turnover rate of cut-down woody biomass to litter 108 prop 0 0.1 0 0 NA
93 92 92 drought tolerance parameter (critical value of day since water stress) 109 n_day 0 100 0 0 NA
94 93 93 crit. amount of snow limiting photosyn. 112 kg/m2 0 20 0 0 NA
95 94 94 limit1 (under:full constrained) of HEATSUM index 113 Celsius 0 50 11 1 0
96 95 95 limit2 (above:unconstrained) of HEATSUM index 114 Celsius 0 100 11 1 1
97 96 96 limit1 (under:full constrained) of TMIN index 115 Celsius -5 5 12 1 0
98 97 97 limit2 (above:unconstrained) of TMIN index 116 Celsius 0 10 12 1 1
99 98 98 limit1 (above:full constrained) of VPD index 117 Pa 2000 600 13 1 0
100 99 99 limit2 (under:unconstrained) of VPD index 118 Pa 500 1500 13 1 1
101 100 100 limit1 (under:full constrained) of DAYLENGTH index 119 s 0 0 14 1 0
102 101 101 limit2 (above:unconstrained) of DAYLENGTH index 120 s 0 0 14 1 1
103 102 102 moving average (to avoid the effects of extreme events) 121 n_day 2 20 0 0 NA
104 103 103 GSI limit1 (greater that limit -> start of vegper) 122 dimless 0 0.2 0 0 NA
105 104 104 GSI limit2 (less that limit -> end of vegper) 123 dimless 0 0.1 0 0 NA
106 105 105 length of phenophase (GDD) 127 Celsius 0 10000 0 0 NA
107 106 106 leaf ALLOCATION -0 128.6 prop 0 1 15 -3 1
108 107 107 fine root ALLOCATION-0 129.6 prop 0 1 15 -3 1
109 108 108 fruit ALLOCATION -0 130.6 prop 0 1 15 -3 1
110 109 109 soft stem ALLOCATION-0 131.6 prop 0 1 15 -3 1
111 110 110 live woody stem ALLOCATION -0 132.6 prop 0 1 15 -3 1
112 111 111 dead woody stem ALLOCATION -0 133.6 prop 0 1 15 -3 1
113 112 112 live coarse root ALLOCATION-0 134.6 prop 0 1 15 -3 1
114 113 113 dead coarse root ALLOCATION -0 135.6 prop 0 1 15 -3 1
115 114 114 canopy average specific leaf area-0 136.6 m2/kg 0 2 0 0 NA
116 115 115 current growth proportion-0 137.6 prop 0 0 0 0 NA
117 116 116 maximal lifetime of plant tissue-0 138.6 Celsius 1 20000 0 0 NA
118 117 106 leaf ALLOCATION -1 128.61 prop 0 1 16 -3 1
119 118 107 fine root ALLOCATION-1 129.61 prop 0 1 16 -3 1
120 119 108 fruit ALLOCATION -1 130.61 prop 0 1 16 -3 1
121 120 109 soft stem ALLOCATION-1 131.61 prop 0 1 16 -3 1
122 121 110 live woody stem ALLOCATION -1 132.61 prop 0 1 16 -3 1
123 122 111 dead woody stem ALLOCATION -1 133.61 prop 0 1 16 -3 1
124 123 112 live coarse root ALLOCATION-1 134.61 prop 0 1 16 -3 1
125 124 113 dead coarse root ALLOCATION -1 135.61 prop 0 1 16 -3 1
126 125 114 canopy average specific leaf area-1 136.61 m2/kg 0 2 0 0 NA
127 126 115 current growth proportion-1 137.61 prop 0 0 0 0 NA
128 127 116 maximal lifetime of plant tissue-1 138.61 Celsius 1 20000 0 0 NA
129 128 106 leaf ALLOCATION -2 128.62 prop 0 1 17 -3 1
130 129 107 fine root ALLOCATION-2 129.62 prop 0 1 17 -3 1
131 130 108 fruit ALLOCATION -2 130.62 prop 0 1 17 -3 1
132 131 109 soft stem ALLOCATION-2 131.62 prop 0 1 17 -3 1
133 132 110 live woody stem ALLOCATION -2 132.62 prop 0 1 17 -3 1
134 133 111 dead woody stem ALLOCATION -2 133.62 prop 0 1 17 -3 1
135 134 112 live coarse root ALLOCATION-2 134.62 prop 0 1 17 -3 1
136 135 113 dead coarse root ALLOCATION -2 135.62 prop 0 1 17 -3 1
137 136 114 canopy average specific leaf area-2 136.62 m2/kg 0 2 0 0 NA
138 137 115 current growth proportion-2 137.62 prop 0 0 0 0 NA
139 138 116 maximal lifetime of plant tissue-2 138.62 Celsius 1 20000 0 0 NA
140 139 106 leaf ALLOCATION -3 128.63 prop 0 1 18 -3 1
141 140 107 fine root ALLOCATION-3 129.63 prop 0 1 18 -3 1
142 141 108 fruit ALLOCATION -3 130.63 prop 0 1 18 -3 1
143 142 109 soft stem ALLOCATION-3 131.63 prop 0 1 18 -3 1
144 143 110 live woody stem ALLOCATION -3 132.63 prop 0 1 18 -3 1
145 144 111 dead woody stem ALLOCATION -3 133.63 prop 0 1 18 -3 1
146 145 112 live coarse root ALLOCATION-3 134.63 prop 0 1 18 -3 1
147 146 113 dead coarse root ALLOCATION -3 135.63 prop 0 1 18 -3 1
148 147 114 canopy average specific leaf area-3 136.63 m2/kg 0 2 0 0 NA
149 148 115 current growth proportion-3 137.63 prop 0 0 0 0 NA
150 149 116 maximal lifetime of plant tissue-3 138.63 Celsius 1 20000 0 0 NA
151 150 106 leaf ALLOCATION -4 128.64 prop 0 1 19 -3 1
152 151 107 fine root ALLOCATION-4 129.64 prop 0 1 19 -3 1
153 152 108 fruit ALLOCATION -4 130.64 prop 0 1 19 -3 1
154 153 109 soft stem ALLOCATION-4 131.64 prop 0 1 19 -3 1
155 154 110 live woody stem ALLOCATION -4 132.64 prop 0 1 19 -3 1
156 155 111 dead woody stem ALLOCATION -4 133.64 prop 0 1 19 -3 1
157 156 112 live coarse root ALLOCATION-4 134.64 prop 0 1 19 -3 1
158 157 113 dead coarse root ALLOCATION -4 135.64 prop 0 1 19 -3 1
159 158 114 canopy average specific leaf area-4 136.64 m2/kg 0 2 0 0 NA
160 159 115 current growth proportion-4 137.64 prop 0 0 0 0 NA
161 160 116 maximal lifetime of plant tissue-4 138.64 Celsius 1 20000 0 0 NA
162 161 106 leaf ALLOCATION -5 128.65 prop 0 1 20 -3 1
163 162 107 fine root ALLOCATION-5 129.65 prop 0 1 20 -3 1
164 163 108 fruit ALLOCATION -5 130.65 prop 0 1 20 -3 1
165 164 109 soft stem ALLOCATION-5 131.65 prop 0 1 20 -3 1
166 165 110 live woody stem ALLOCATION -5 132.65 prop 0 1 20 -3 1
167 166 111 dead woody stem ALLOCATION -5 133.65 prop 0 1 20 -3 1
168 167 112 live coarse root ALLOCATION-5 134.65 prop 0 1 20 -3 1
169 168 113 dead coarse root ALLOCATION -5 135.65 prop 0 1 20 -3 1
170 169 114 canopy average specific leaf area-5 136.65 m2/kg 0 2 0 0 NA
171 170 115 current growth proportion-5 137.65 prop 0 0 0 0 NA
172 171 116 maximal lifetime of plant tissue-5 138.65 Celsius 1 20000 0 0 NA
173 172 106 leaf ALLOCATION -6 128.66 prop 0 1 21 -3 1
174 173 107 fine root ALLOCATION-6 129.66 prop 0 1 21 -3 1
175 174 108 fruit ALLOCATION -6 130.66 prop 0 1 21 -3 1
176 175 109 soft stem ALLOCATION-6 131.66 prop 0 1 21 -3 1
177 176 110 live woody stem ALLOCATION -6 132.66 prop 0 1 21 -3 1
178 177 111 dead woody stem ALLOCATION -6 133.66 prop 0 1 21 -3 1
179 178 112 live coarse root ALLOCATION-6 134.66 prop 0 1 21 -3 1
180 179 113 dead coarse root ALLOCATION -6 135.66 prop 0 1 21 -3 1
181 180 114 canopy average specific leaf area-6 136.66 m2/kg 0 2 0 0 NA
182 181 115 current growth proportion-6 137.66 prop 0 0 0 0 NA
183 182 116 maximal lifetime of plant tissue-6 138.66 Celsius 1 20000 0 0 NA

189
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X,NAME,INDEX,UNIT,MIN,MAX,DEPENDENCE,GROUP,TYPE
1,"yearday to start new growth",9,yday,0,364,NA,0,0
2,"yearday to end new growth",10,yday,0,364,NA,0,0
3,"transfer growth period as fraction of growing season",11,prop,0,1,NA,0,0
4,"litterfall as fraction of growing season",12,prop,0,1,NA,0,0
5,"base temperature",13,Celsius,0,12,NA,0,0
6,"minimum temperature for growth displayed on current day",14,Celsius,0,10,0,1,1
7,"optimal1 temperature for growth displayed on current day",15,Celsius,10,20,1,1,1
8,"optimal2 temperature for growth displayed on current day",16,Celsius,20,40,2,1,1
9,"maxmimum temperature for growth displayed on current day",17,Celsius,30,50,3,1,1
10,"minimum temperature for carbon assimilation displayed on current day",18,Celsius,0,10,0,2,1
11,"optimal1 temperature for carbon assimilation displayed on current day",19,Celsius,10,20,1,2,1
12,"optimal2 temperature for carbon assimilation displayed on current day",20,Celsius,20,40,2,2,1
13,"maxmimum temperature for carbon assimilation displayed on current day",21,Celsius,30,50,3,2,1
14,"annual leaf and fine root turnover fraction",22,1/yr,0.1,0.4,NA,0,0
15,"annual live wood turnover fraction",23,1/yr,0.5,1,NA,0,0
16,"annual fire mortality fraction",24,1/yr,0,1,NA,0,0
17,"whole-plant mortality paramter for vegetation period",25,1/vegper,0,0.5,NA,0,0
18,"C:N of leaves",26,kgC/kgN,10,100,0,3,1
19,"C:N of leaf litter",27,kgC/kgN,10,60,1,3,1
20,"C:N of fine roots",28,kgC/kgN,10,60,1,3,1
21,"C:N of fruit",29,kgC/kgN,10,60,1,3,1
22,"C:N of softstem",30,kgC/kgN,10,60,1,3,1
23,"C:N of live wood",31,kgC/kgN,50,100,0,4,1
24,"C:N of dead wood",32,kgC/kgN,300,800,1,4,1
25,"dry matter content of leaves",33,kgC/kgDM,0.2,0.6,NA,0,0
26,"dry matter content of leaf litter",34,kgC/kgDM,0.2,0.6,NA,0,0
27,"dry matter content of fine roots",35,kgC/kgDM,0.2,0.6,NA,0,0
28,"dry matter content of fruit",36,kgC/kgDM,0.2,0.6,NA,0,0
29,"dry matter content of softstem",37,kgC/kgDM,0.2,0.6,NA,0,0
30,"dry matter content of live wood",38,kgC/kgDM,0.2,0.6,NA,0,0
31,"dry matter content of dead wood",39,kgC/kgDM,0.2,0.6,NA,0,0
32,"leaf litter labile proportion",40,prop,0.1,0.6,1,5,2
33,"leaf litter cellulose proportion",41,prop,0.1,0.6,1,5,2
34,"fine root labile proportion",42,prop,0.1,0.6,1,6,2
35,"fine root cellulose proportion",43,prop,0.1,0.6,1,6,2
36,"fruit labile proportion",44,prop,0.1,0.6,1,7,2
37,"fruit cellulose proportion",45,prop,0.1,0.6,1,7,2
38,"softstem labile proportion",46,prop,0.1,0.6,1,8,2
39,"softstem cellulose proportion",47,prop,0.1,0.6,1,8,2
40,"dead wood cellulose proportion",48,prop,0.5,0.9,NA,0,0
41,"canopy water interception coefficient",49,1/LAI/d,0.01,0.1,NA,0,0
42,"canopy light extinction coefficient",50,dimless,0.2,0.8,NA,0,0
43,"potential radiation use efficiency",51,g/MJ,2,2,NA,0,0
44,"radiation parameter1 (Jiang et al.2015)",52,dimless,0.781,0.781,NA,0,0
45,"radiation parameter1 (Jiang et al.2015)",53,dimless,-13.596,-13.596,NA,0,0
46,"all-sided to projected leaf area ratio",54,dimless,2,2,NA,0,0
47,"ratio of shaded SLA:sunlit SLA",55,dimless,2,2,NA,0,0
48,"fraction of leaf N in Rubisco",56,dimless,0.01,0.2,NA,0,0
49,"fraction of leaf N in PeP",57,dimless,0.0424,0.0424,NA,0,0
50,"maximum stomatal conductance",58,m/s,0.001,0.1,NA,0,0
51,"cuticular conductance",59,m/s,1E-05,0.0001,NA,0,0
52,"boundary layer conductance",60,m/s,0.01,0.09,NA,0,0
53,"maximum height of plant",61,m,0.1,10,NA,0,0
54,"stem weight corresponding to maximum height",62,kgC,0.1,100,NA,0,0
55,"plant height function shape parameter (slope)",63,dimless,0.5,0.5,NA,0,0
56,"maximum depth of rooting zone",64,m,0.1,10,NA,0,0
57,"root distribution parameter",65,prop,3.67,3.67,NA,0,0
58,"root weight corresponding to max root depth",66,kgC/m2,0.4,0.4,NA,0,0
59,"root depth function shape parameter (slope)",67,prop,0.5,0.5,NA,0,0
60,"root weight to rooth length conversion factor",68,m/kg,1000,1000,NA,0,0
61,"growth resp per unit of C grown",69,prop,0.1,0.5,NA,0,0
62,"maintenance respiration in kgC/day per kg of tissue N",70,kgC/kgN/d,0.1,0.5,NA,0,0
63,"theoretical maximum prop. of non-structural and structural carbohydrates",71,dimless,0,1,NA,0,0
64,"prop. of non-structural carbohydrates available for maintanance resp",72,dimless,0,1,NA,0,0
65,"symbiotic+asymbiotic fixation of N",73,kgN/m2/yr,0,0.001,NA,0,0
66,"time delay for temperature in photosynthesis acclimation",74,day,0,50,NA,0,0
67,"critical VWCratio (prop. to FC-WP) in germination",79,prop,0,1,NA,0,0
68,"critical photoslow daylength",81,hour,14,18,NA,0,0
69,"slope of relative photoslow development rate",82,dimless,0.005,0.005,NA,0,0
70,"critical vernalization temperature 1",84,Celsius,-5,5,0,9,1
71,"critical vernalization temperature 2",85,Celsius,0,10,1,9,1
72,"critical vernalization temperature 3",86,Celsius,5,15,2,9,1
73,"critical vernalization temperature 4",87,Celsius,10,20,3,9,1
74,"slope of relative vernalization development rate",88,dimless,0.04,0.04,NA,0,0
75,"required vernalization days (in vernalization development rate)",89,dimless,30,70,NA,0,0
76,"critical flowering heat stress temperature 1",91,Celsius,30,40,0,10,1
77,"critical flowering heat stress temperature 2",92,Celsius,30,50,1,10,1
78,"theoretical maximum of flowering thermal stress mortality",93,prop,0,0.4,NA,0,0
79,"VWC ratio to calc. soil moisture limit 1 (prop. to FC-WP)",96,prop,0.5,1,NA,0,0
80,"VWC ratio to calc. soil moisture limit 2 (prop. to SAT-FC)",97,prop,0.5,1,NA,0,0
81,"minimum of soil moisture limit2 multiplicator (full anoxic stress value)",98,prop,0,1,NA,0,0
82,"vapor pressure deficit: start of conductance reduction",99,Pa,500,1500,NA,0,0
83,"vapor pressure deficit: complete conductance reduction",100,Pa,1500,3500,NA,0,0
84,"maximum senescence mortality coefficient of aboveground plant material",101,prop,0,0.1,NA,0,0
85,"maximum senescence mortality coefficient of belowground plant material",102,prop,0,0.1,NA,0,0
86,"maximum senescence mortality coefficient of non-structured plant material",103,prop,0,0.1,NA,0,0
87,"lower limit extreme high temperature effect on senescence mortality",104,Celsius,30,40,NA,0,0
88,"upper limit extreme high temperature effect on senescence mortality",105,Celsius,30,50,NA,0,0
89,"turnover rate of wilted standing biomass to litter",106,prop,0,0.1,NA,0,0
90,"turnover rate of cut-down non-woody biomass to litter",107,prop,0,0.1,NA,0,0
91,"turnover rate of cut-down woody biomass to litter",108,prop,0,0.1,NA,0,0
92,"drought tolerance parameter (critical value of day since water stress)",109,n_day,0,100,NA,0,0
93,"crit. amount of snow limiting photosyn.",112,kg/m2,0,20,NA,0,0
94,"limit1 (under:full constrained) of HEATSUM index",113,Celsius,0,50,0,11,1
95,"limit2 (above:unconstrained) of HEATSUM index",114,Celsius,0,100,1,11,1
96,"limit1 (under:full constrained) of TMIN index",115,Celsius,-5,5,0,12,1
97,"limit2 (above:unconstrained) of TMIN index",116,Celsius,0,10,1,12,1
98,"limit1 (above:full constrained) of VPD index",117,Pa,2000,600,0,13,1
99,"limit2 (under:unconstrained) of VPD index",118,Pa,500,1500,1,13,1
100,"limit1 (under:full constrained) of DAYLENGTH index",119,s,0,0,0,14,1
101,"limit2 (above:unconstrained) of DAYLENGTH index",120,s,0,0,1,14,1
102,"moving average (to avoid the effects of extreme events)",121,n_day,2,20,NA,0,0
103,"GSI limit1 (greater that limit -> start of vegper)",122,dimless,0,0.2,NA,0,0
104,"GSI limit2 (less that limit -> end of vegper)",123,dimless,0,0.1,NA,0,0
105,"length of phenophase (GDD)-0",127.6,Celsius,0,10000,NA,0,0
106,"leaf ALLOCATION -0",128.6,prop,0,1,1,15,-3
107,"fine root ALLOCATION-0",129.6,prop,0,1,1,15,-3
108,"fruit ALLOCATION -0",130.6,prop,0,1,1,15,-3
109,"soft stem ALLOCATION-0",131.6,prop,0,1,1,15,-3
110,"live woody stem ALLOCATION -0",132.6,prop,0,1,1,15,-3
111,"dead woody stem ALLOCATION -0",133.6,prop,0,1,1,15,-3
112,"live coarse root ALLOCATION-0",134.6,prop,0,1,1,15,-3
113,"dead coarse root ALLOCATION -0",135.6,prop,0,1,1,15,-3
114,"canopy average specific leaf area-0",136.6,m2/kg,0,2,NA,0,0
115,"current growth proportion-0",137.6,prop,0,0,NA,0,0
116,"maximal lifetime of plant tissue-0",138.6,Celsius,1,20000,NA,0,0
105,"length of phenophase (GDD)-1",127.61,Celsius,0,10000,NA,0,0
106,"leaf ALLOCATION -1",128.61,prop,0,1,1,16,-3
107,"fine root ALLOCATION-1",129.61,prop,0,1,1,16,-3
108,"fruit ALLOCATION -1",130.61,prop,0,1,1,16,-3
109,"soft stem ALLOCATION-1",131.61,prop,0,1,1,16,-3
110,"live woody stem ALLOCATION -1",132.61,prop,0,1,1,16,-3
111,"dead woody stem ALLOCATION -1",133.61,prop,0,1,1,16,-3
112,"live coarse root ALLOCATION-1",134.61,prop,0,1,1,16,-3
113,"dead coarse root ALLOCATION -1",135.61,prop,0,1,1,16,-3
114,"canopy average specific leaf area-1",136.61,m2/kg,0,2,NA,0,0
115,"current growth proportion-1",137.61,prop,0,0,NA,0,0
116,"maximal lifetime of plant tissue-1",138.61,Celsius,1,20000,NA,0,0
105,"length of phenophase (GDD)-2",127.62,Celsius,0,10000,NA,0,0
106,"leaf ALLOCATION -2",128.62,prop,0,1,1,17,-3
107,"fine root ALLOCATION-2",129.62,prop,0,1,1,17,-3
108,"fruit ALLOCATION -2",130.62,prop,0,1,1,17,-3
109,"soft stem ALLOCATION-2",131.62,prop,0,1,1,17,-3
110,"live woody stem ALLOCATION -2",132.62,prop,0,1,1,17,-3
111,"dead woody stem ALLOCATION -2",133.62,prop,0,1,1,17,-3
112,"live coarse root ALLOCATION-2",134.62,prop,0,1,1,17,-3
113,"dead coarse root ALLOCATION -2",135.62,prop,0,1,1,17,-3
114,"canopy average specific leaf area-2",136.62,m2/kg,0,2,NA,0,0
115,"current growth proportion-2",137.62,prop,0,0,NA,0,0
116,"maximal lifetime of plant tissue-2",138.62,Celsius,1,20000,NA,0,0
105,"length of phenophase (GDD)-3",127.63,Celsius,0,10000,NA,0,0
106,"leaf ALLOCATION -3",128.63,prop,0,1,1,18,-3
107,"fine root ALLOCATION-3",129.63,prop,0,1,1,18,-3
108,"fruit ALLOCATION -3",130.63,prop,0,1,1,18,-3
109,"soft stem ALLOCATION-3",131.63,prop,0,1,1,18,-3
110,"live woody stem ALLOCATION -3",132.63,prop,0,1,1,18,-3
111,"dead woody stem ALLOCATION -3",133.63,prop,0,1,1,18,-3
112,"live coarse root ALLOCATION-3",134.63,prop,0,1,1,18,-3
113,"dead coarse root ALLOCATION -3",135.63,prop,0,1,1,18,-3
114,"canopy average specific leaf area-3",136.63,m2/kg,0,2,NA,0,0
115,"current growth proportion-3",137.63,prop,0,0,NA,0,0
116,"maximal lifetime of plant tissue-3",138.63,Celsius,1,20000,NA,0,0
105,"length of phenophase (GDD)-4",127.64,Celsius,0,10000,NA,0,0
106,"leaf ALLOCATION -4",128.64,prop,0,1,1,19,-3
107,"fine root ALLOCATION-4",129.64,prop,0,1,1,19,-3
108,"fruit ALLOCATION -4",130.64,prop,0,1,1,19,-3
109,"soft stem ALLOCATION-4",131.64,prop,0,1,1,19,-3
110,"live woody stem ALLOCATION -4",132.64,prop,0,1,1,19,-3
111,"dead woody stem ALLOCATION -4",133.64,prop,0,1,1,19,-3
112,"live coarse root ALLOCATION-4",134.64,prop,0,1,1,19,-3
113,"dead coarse root ALLOCATION -4",135.64,prop,0,1,1,19,-3
114,"canopy average specific leaf area-4",136.64,m2/kg,0,2,NA,0,0
115,"current growth proportion-4",137.64,prop,0,0,NA,0,0
116,"maximal lifetime of plant tissue-4",138.64,Celsius,1,20000,NA,0,0
105,"length of phenophase (GDD)-5",127.65,Celsius,0,10000,NA,0,0
106,"leaf ALLOCATION -5",128.65,prop,0,1,1,20,-3
107,"fine root ALLOCATION-5",129.65,prop,0,1,1,20,-3
108,"fruit ALLOCATION -5",130.65,prop,0,1,1,20,-3
109,"soft stem ALLOCATION-5",131.65,prop,0,1,1,20,-3
110,"live woody stem ALLOCATION -5",132.65,prop,0,1,1,20,-3
111,"dead woody stem ALLOCATION -5",133.65,prop,0,1,1,20,-3
112,"live coarse root ALLOCATION-5",134.65,prop,0,1,1,20,-3
113,"dead coarse root ALLOCATION -5",135.65,prop,0,1,1,20,-3
114,"canopy average specific leaf area-5",136.65,m2/kg,0,2,NA,0,0
115,"current growth proportion-5",137.65,prop,0,0,NA,0,0
116,"maximal lifetime of plant tissue-5",138.65,Celsius,1,20000,NA,0,0
105,"length of phenophase (GDD)-6",127.6,Celsius,0,10000,NA,0,0
106,"leaf ALLOCATION -6",128.66,prop,0,1,1,21,-3
107,"fine root ALLOCATION-6",129.66,prop,0,1,1,21,-3
108,"fruit ALLOCATION -6",130.66,prop,0,1,1,21,-3
109,"soft stem ALLOCATION-6",131.66,prop,0,1,1,21,-3
110,"live woody stem ALLOCATION -6",132.66,prop,0,1,1,21,-3
111,"dead woody stem ALLOCATION -6",133.66,prop,0,1,1,21,-3
112,"live coarse root ALLOCATION-6",134.66,prop,0,1,1,21,-3
113,"dead coarse root ALLOCATION -6",135.66,prop,0,1,1,21,-3
114,"canopy average specific leaf area-6",136.66,m2/kg,0,2,NA,0,0
115,"current growth proportion-6",137.66,prop,0,0,NA,0,0
116,"maximal lifetime of plant tissue-6",138.66,Celsius,1,20000,NA,0,0
1 X NAME INDEX UNIT MIN MAX DEPENDENCE GROUP TYPE
2 1 yearday to start new growth 9 yday 0 364 NA 0 0
3 2 yearday to end new growth 10 yday 0 364 NA 0 0
4 3 transfer growth period as fraction of growing season 11 prop 0 1 NA 0 0
5 4 litterfall as fraction of growing season 12 prop 0 1 NA 0 0
6 5 base temperature 13 Celsius 0 12 NA 0 0
7 6 minimum temperature for growth displayed on current day 14 Celsius 0 10 0 1 1
8 7 optimal1 temperature for growth displayed on current day 15 Celsius 10 20 1 1 1
9 8 optimal2 temperature for growth displayed on current day 16 Celsius 20 40 2 1 1
10 9 maxmimum temperature for growth displayed on current day 17 Celsius 30 50 3 1 1
11 10 minimum temperature for carbon assimilation displayed on current day 18 Celsius 0 10 0 2 1
12 11 optimal1 temperature for carbon assimilation displayed on current day 19 Celsius 10 20 1 2 1
13 12 optimal2 temperature for carbon assimilation displayed on current day 20 Celsius 20 40 2 2 1
14 13 maxmimum temperature for carbon assimilation displayed on current day 21 Celsius 30 50 3 2 1
15 14 annual leaf and fine root turnover fraction 22 1/yr 0.1 0.4 NA 0 0
16 15 annual live wood turnover fraction 23 1/yr 0.5 1 NA 0 0
17 16 annual fire mortality fraction 24 1/yr 0 1 NA 0 0
18 17 whole-plant mortality paramter for vegetation period 25 1/vegper 0 0.5 NA 0 0
19 18 C:N of leaves 26 kgC/kgN 10 100 0 3 1
20 19 C:N of leaf litter 27 kgC/kgN 10 60 1 3 1
21 20 C:N of fine roots 28 kgC/kgN 10 60 1 3 1
22 21 C:N of fruit 29 kgC/kgN 10 60 1 3 1
23 22 C:N of softstem 30 kgC/kgN 10 60 1 3 1
24 23 C:N of live wood 31 kgC/kgN 50 100 0 4 1
25 24 C:N of dead wood 32 kgC/kgN 300 800 1 4 1
26 25 dry matter content of leaves 33 kgC/kgDM 0.2 0.6 NA 0 0
27 26 dry matter content of leaf litter 34 kgC/kgDM 0.2 0.6 NA 0 0
28 27 dry matter content of fine roots 35 kgC/kgDM 0.2 0.6 NA 0 0
29 28 dry matter content of fruit 36 kgC/kgDM 0.2 0.6 NA 0 0
30 29 dry matter content of softstem 37 kgC/kgDM 0.2 0.6 NA 0 0
31 30 dry matter content of live wood 38 kgC/kgDM 0.2 0.6 NA 0 0
32 31 dry matter content of dead wood 39 kgC/kgDM 0.2 0.6 NA 0 0
33 32 leaf litter labile proportion 40 prop 0.1 0.6 1 5 2
34 33 leaf litter cellulose proportion 41 prop 0.1 0.6 1 5 2
35 34 fine root labile proportion 42 prop 0.1 0.6 1 6 2
36 35 fine root cellulose proportion 43 prop 0.1 0.6 1 6 2
37 36 fruit labile proportion 44 prop 0.1 0.6 1 7 2
38 37 fruit cellulose proportion 45 prop 0.1 0.6 1 7 2
39 38 softstem labile proportion 46 prop 0.1 0.6 1 8 2
40 39 softstem cellulose proportion 47 prop 0.1 0.6 1 8 2
41 40 dead wood cellulose proportion 48 prop 0.5 0.9 NA 0 0
42 41 canopy water interception coefficient 49 1/LAI/d 0.01 0.1 NA 0 0
43 42 canopy light extinction coefficient 50 dimless 0.2 0.8 NA 0 0
44 43 potential radiation use efficiency 51 g/MJ 2 2 NA 0 0
45 44 radiation parameter1 (Jiang et al.2015) 52 dimless 0.781 0.781 NA 0 0
46 45 radiation parameter1 (Jiang et al.2015) 53 dimless -13.596 -13.596 NA 0 0
47 46 all-sided to projected leaf area ratio 54 dimless 2 2 NA 0 0
48 47 ratio of shaded SLA:sunlit SLA 55 dimless 2 2 NA 0 0
49 48 fraction of leaf N in Rubisco 56 dimless 0.01 0.2 NA 0 0
50 49 fraction of leaf N in PeP 57 dimless 0.0424 0.0424 NA 0 0
51 50 maximum stomatal conductance 58 m/s 0.001 0.1 NA 0 0
52 51 cuticular conductance 59 m/s 1E-05 0.0001 NA 0 0
53 52 boundary layer conductance 60 m/s 0.01 0.09 NA 0 0
54 53 maximum height of plant 61 m 0.1 10 NA 0 0
55 54 stem weight corresponding to maximum height 62 kgC 0.1 100 NA 0 0
56 55 plant height function shape parameter (slope) 63 dimless 0.5 0.5 NA 0 0
57 56 maximum depth of rooting zone 64 m 0.1 10 NA 0 0
58 57 root distribution parameter 65 prop 3.67 3.67 NA 0 0
59 58 root weight corresponding to max root depth 66 kgC/m2 0.4 0.4 NA 0 0
60 59 root depth function shape parameter (slope) 67 prop 0.5 0.5 NA 0 0
61 60 root weight to rooth length conversion factor 68 m/kg 1000 1000 NA 0 0
62 61 growth resp per unit of C grown 69 prop 0.1 0.5 NA 0 0
63 62 maintenance respiration in kgC/day per kg of tissue N 70 kgC/kgN/d 0.1 0.5 NA 0 0
64 63 theoretical maximum prop. of non-structural and structural carbohydrates 71 dimless 0 1 NA 0 0
65 64 prop. of non-structural carbohydrates available for maintanance resp 72 dimless 0 1 NA 0 0
66 65 symbiotic+asymbiotic fixation of N 73 kgN/m2/yr 0 0.001 NA 0 0
67 66 time delay for temperature in photosynthesis acclimation 74 day 0 50 NA 0 0
68 67 critical VWCratio (prop. to FC-WP) in germination 79 prop 0 1 NA 0 0
69 68 critical photoslow daylength 81 hour 14 18 NA 0 0
70 69 slope of relative photoslow development rate 82 dimless 0.005 0.005 NA 0 0
71 70 critical vernalization temperature 1 84 Celsius -5 5 0 9 1
72 71 critical vernalization temperature 2 85 Celsius 0 10 1 9 1
73 72 critical vernalization temperature 3 86 Celsius 5 15 2 9 1
74 73 critical vernalization temperature 4 87 Celsius 10 20 3 9 1
75 74 slope of relative vernalization development rate 88 dimless 0.04 0.04 NA 0 0
76 75 required vernalization days (in vernalization development rate) 89 dimless 30 70 NA 0 0
77 76 critical flowering heat stress temperature 1 91 Celsius 30 40 0 10 1
78 77 critical flowering heat stress temperature 2 92 Celsius 30 50 1 10 1
79 78 theoretical maximum of flowering thermal stress mortality 93 prop 0 0.4 NA 0 0
80 79 VWC ratio to calc. soil moisture limit 1 (prop. to FC-WP) 96 prop 0.5 1 NA 0 0
81 80 VWC ratio to calc. soil moisture limit 2 (prop. to SAT-FC) 97 prop 0.5 1 NA 0 0
82 81 minimum of soil moisture limit2 multiplicator (full anoxic stress value) 98 prop 0 1 NA 0 0
83 82 vapor pressure deficit: start of conductance reduction 99 Pa 500 1500 NA 0 0
84 83 vapor pressure deficit: complete conductance reduction 100 Pa 1500 3500 NA 0 0
85 84 maximum senescence mortality coefficient of aboveground plant material 101 prop 0 0.1 NA 0 0
86 85 maximum senescence mortality coefficient of belowground plant material 102 prop 0 0.1 NA 0 0
87 86 maximum senescence mortality coefficient of non-structured plant material 103 prop 0 0.1 NA 0 0
88 87 lower limit extreme high temperature effect on senescence mortality 104 Celsius 30 40 NA 0 0
89 88 upper limit extreme high temperature effect on senescence mortality 105 Celsius 30 50 NA 0 0
90 89 turnover rate of wilted standing biomass to litter 106 prop 0 0.1 NA 0 0
91 90 turnover rate of cut-down non-woody biomass to litter 107 prop 0 0.1 NA 0 0
92 91 turnover rate of cut-down woody biomass to litter 108 prop 0 0.1 NA 0 0
93 92 drought tolerance parameter (critical value of day since water stress) 109 n_day 0 100 NA 0 0
94 93 crit. amount of snow limiting photosyn. 112 kg/m2 0 20 NA 0 0
95 94 limit1 (under:full constrained) of HEATSUM index 113 Celsius 0 50 0 11 1
96 95 limit2 (above:unconstrained) of HEATSUM index 114 Celsius 0 100 1 11 1
97 96 limit1 (under:full constrained) of TMIN index 115 Celsius -5 5 0 12 1
98 97 limit2 (above:unconstrained) of TMIN index 116 Celsius 0 10 1 12 1
99 98 limit1 (above:full constrained) of VPD index 117 Pa 2000 600 0 13 1
100 99 limit2 (under:unconstrained) of VPD index 118 Pa 500 1500 1 13 1
101 100 limit1 (under:full constrained) of DAYLENGTH index 119 s 0 0 0 14 1
102 101 limit2 (above:unconstrained) of DAYLENGTH index 120 s 0 0 1 14 1
103 102 moving average (to avoid the effects of extreme events) 121 n_day 2 20 NA 0 0
104 103 GSI limit1 (greater that limit -> start of vegper) 122 dimless 0 0.2 NA 0 0
105 104 GSI limit2 (less that limit -> end of vegper) 123 dimless 0 0.1 NA 0 0
106 105 length of phenophase (GDD)-0 127.6 Celsius 0 10000 NA 0 0
107 106 leaf ALLOCATION -0 128.6 prop 0 1 1 15 -3
108 107 fine root ALLOCATION-0 129.6 prop 0 1 1 15 -3
109 108 fruit ALLOCATION -0 130.6 prop 0 1 1 15 -3
110 109 soft stem ALLOCATION-0 131.6 prop 0 1 1 15 -3
111 110 live woody stem ALLOCATION -0 132.6 prop 0 1 1 15 -3
112 111 dead woody stem ALLOCATION -0 133.6 prop 0 1 1 15 -3
113 112 live coarse root ALLOCATION-0 134.6 prop 0 1 1 15 -3
114 113 dead coarse root ALLOCATION -0 135.6 prop 0 1 1 15 -3
115 114 canopy average specific leaf area-0 136.6 m2/kg 0 2 NA 0 0
116 115 current growth proportion-0 137.6 prop 0 0 NA 0 0
117 116 maximal lifetime of plant tissue-0 138.6 Celsius 1 20000 NA 0 0
118 105 length of phenophase (GDD)-1 127.61 Celsius 0 10000 NA 0 0
119 106 leaf ALLOCATION -1 128.61 prop 0 1 1 16 -3
120 107 fine root ALLOCATION-1 129.61 prop 0 1 1 16 -3
121 108 fruit ALLOCATION -1 130.61 prop 0 1 1 16 -3
122 109 soft stem ALLOCATION-1 131.61 prop 0 1 1 16 -3
123 110 live woody stem ALLOCATION -1 132.61 prop 0 1 1 16 -3
124 111 dead woody stem ALLOCATION -1 133.61 prop 0 1 1 16 -3
125 112 live coarse root ALLOCATION-1 134.61 prop 0 1 1 16 -3
126 113 dead coarse root ALLOCATION -1 135.61 prop 0 1 1 16 -3
127 114 canopy average specific leaf area-1 136.61 m2/kg 0 2 NA 0 0
128 115 current growth proportion-1 137.61 prop 0 0 NA 0 0
129 116 maximal lifetime of plant tissue-1 138.61 Celsius 1 20000 NA 0 0
130 105 length of phenophase (GDD)-2 127.62 Celsius 0 10000 NA 0 0
131 106 leaf ALLOCATION -2 128.62 prop 0 1 1 17 -3
132 107 fine root ALLOCATION-2 129.62 prop 0 1 1 17 -3
133 108 fruit ALLOCATION -2 130.62 prop 0 1 1 17 -3
134 109 soft stem ALLOCATION-2 131.62 prop 0 1 1 17 -3
135 110 live woody stem ALLOCATION -2 132.62 prop 0 1 1 17 -3
136 111 dead woody stem ALLOCATION -2 133.62 prop 0 1 1 17 -3
137 112 live coarse root ALLOCATION-2 134.62 prop 0 1 1 17 -3
138 113 dead coarse root ALLOCATION -2 135.62 prop 0 1 1 17 -3
139 114 canopy average specific leaf area-2 136.62 m2/kg 0 2 NA 0 0
140 115 current growth proportion-2 137.62 prop 0 0 NA 0 0
141 116 maximal lifetime of plant tissue-2 138.62 Celsius 1 20000 NA 0 0
142 105 length of phenophase (GDD)-3 127.63 Celsius 0 10000 NA 0 0
143 106 leaf ALLOCATION -3 128.63 prop 0 1 1 18 -3
144 107 fine root ALLOCATION-3 129.63 prop 0 1 1 18 -3
145 108 fruit ALLOCATION -3 130.63 prop 0 1 1 18 -3
146 109 soft stem ALLOCATION-3 131.63 prop 0 1 1 18 -3
147 110 live woody stem ALLOCATION -3 132.63 prop 0 1 1 18 -3
148 111 dead woody stem ALLOCATION -3 133.63 prop 0 1 1 18 -3
149 112 live coarse root ALLOCATION-3 134.63 prop 0 1 1 18 -3
150 113 dead coarse root ALLOCATION -3 135.63 prop 0 1 1 18 -3
151 114 canopy average specific leaf area-3 136.63 m2/kg 0 2 NA 0 0
152 115 current growth proportion-3 137.63 prop 0 0 NA 0 0
153 116 maximal lifetime of plant tissue-3 138.63 Celsius 1 20000 NA 0 0
154 105 length of phenophase (GDD)-4 127.64 Celsius 0 10000 NA 0 0
155 106 leaf ALLOCATION -4 128.64 prop 0 1 1 19 -3
156 107 fine root ALLOCATION-4 129.64 prop 0 1 1 19 -3
157 108 fruit ALLOCATION -4 130.64 prop 0 1 1 19 -3
158 109 soft stem ALLOCATION-4 131.64 prop 0 1 1 19 -3
159 110 live woody stem ALLOCATION -4 132.64 prop 0 1 1 19 -3
160 111 dead woody stem ALLOCATION -4 133.64 prop 0 1 1 19 -3
161 112 live coarse root ALLOCATION-4 134.64 prop 0 1 1 19 -3
162 113 dead coarse root ALLOCATION -4 135.64 prop 0 1 1 19 -3
163 114 canopy average specific leaf area-4 136.64 m2/kg 0 2 NA 0 0
164 115 current growth proportion-4 137.64 prop 0 0 NA 0 0
165 116 maximal lifetime of plant tissue-4 138.64 Celsius 1 20000 NA 0 0
166 105 length of phenophase (GDD)-5 127.65 Celsius 0 10000 NA 0 0
167 106 leaf ALLOCATION -5 128.65 prop 0 1 1 20 -3
168 107 fine root ALLOCATION-5 129.65 prop 0 1 1 20 -3
169 108 fruit ALLOCATION -5 130.65 prop 0 1 1 20 -3
170 109 soft stem ALLOCATION-5 131.65 prop 0 1 1 20 -3
171 110 live woody stem ALLOCATION -5 132.65 prop 0 1 1 20 -3
172 111 dead woody stem ALLOCATION -5 133.65 prop 0 1 1 20 -3
173 112 live coarse root ALLOCATION-5 134.65 prop 0 1 1 20 -3
174 113 dead coarse root ALLOCATION -5 135.65 prop 0 1 1 20 -3
175 114 canopy average specific leaf area-5 136.65 m2/kg 0 2 NA 0 0
176 115 current growth proportion-5 137.65 prop 0 0 NA 0 0
177 116 maximal lifetime of plant tissue-5 138.65 Celsius 1 20000 NA 0 0
178 105 length of phenophase (GDD)-6 127.6 Celsius 0 10000 NA 0 0
179 106 leaf ALLOCATION -6 128.66 prop 0 1 1 21 -3
180 107 fine root ALLOCATION-6 129.66 prop 0 1 1 21 -3
181 108 fruit ALLOCATION -6 130.66 prop 0 1 1 21 -3
182 109 soft stem ALLOCATION-6 131.66 prop 0 1 1 21 -3
183 110 live woody stem ALLOCATION -6 132.66 prop 0 1 1 21 -3
184 111 dead woody stem ALLOCATION -6 133.66 prop 0 1 1 21 -3
185 112 live coarse root ALLOCATION-6 134.66 prop 0 1 1 21 -3
186 113 dead coarse root ALLOCATION -6 135.66 prop 0 1 1 21 -3
187 114 canopy average specific leaf area-6 136.66 m2/kg 0 2 NA 0 0
188 115 current growth proportion-6 137.66 prop 0 0 NA 0 0
189 116 maximal lifetime of plant tissue-6 138.66 Celsius 1 20000 NA 0 0

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