fixing bugs

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Roland Hollós 2018-09-27 10:03:05 +02:00
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commit 875b5fa336

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@ -38,14 +38,14 @@
<h2>Tartalomjegyz&eacute;k</h2>
<div id="text-table-of-contents">
<ul>
<li><a href="#/slide-orgac974b3">1. Bevezetés</a></li>
<li><a href="#/slide-org7080fbd">2. A workshop célja</a></li>
<li><a href="#/slide-orgf0cba9e">3. A modell input-output kezelése</a></li>
<li><a href="#/slide-org95cb610">4. Input adatok</a></li>
<li><a href="#/slide-orgfa7e8e6">5. Kérdések</a></li>
<li><a href="#/slide-orgb84c0a9">6. RBBGCMuso használata</a></li>
<li><a href="#/slide-org6aa1dd0">7. Kísérletek</a></li>
<li><a href="#/slide-org9e2525f">8. AgroMo-<i>Lite</i></a></li>
<li><a href="#/slide-orgbd763d4">1. Bevezetés</a></li>
<li><a href="#/slide-org79fc7b0">2. A workshop célja</a></li>
<li><a href="#/slide-org6d1c165">3. A modell input-output kezelése</a></li>
<li><a href="#/slide-orgb484aea">4. Input adatok</a></li>
<li><a href="#/slide-org0e0b86b">5. Kérdések</a></li>
<li><a href="#/slide-org4429a7f">6. RBBGCMuso használata</a></li>
<li><a href="#/slide-orgd60249e">7. Kísérletek</a></li>
<li><a href="#/slide-org2ecbf08">8. AgroMo-<i>Lite</i></a></li>
</ul>
</div>
</div>
@ -53,12 +53,12 @@
<section>
<section id="slide-sec-1">
<h2 id="orgac974b3"><span class="section-number-2">1</span> Bevezetés</h2>
<h2 id="orgbd763d4"><span class="section-number-2">1</span> Bevezetés</h2>
<div class="outline-text-2" id="text-1">
</div>
</section>
<section id="slide-sec-1-1">
<h3 id="org2dfb8f9"><span class="section-number-3">1.1</span> AgroMo használatának szintjei</h3>
<h3 id="org5ae7c0e"><span class="section-number-3">1.1</span> AgroMo használatának szintjei</h3>
<ol>
<li>AgroMo Lite</li>
<li>AgroMo Spatial</li>
@ -69,7 +69,7 @@
</section>
<section id="slide-sec-1-2">
<h3 id="org609a675"><span class="section-number-3">1.2</span> Az RBBGCMuso:</h3>
<h3 id="org9581184"><span class="section-number-3">1.2</span> Az RBBGCMuso:</h3>
<ul>
<li>interfész,</li>
<li>grafikus megjelenítő,</li>
@ -82,7 +82,7 @@
</section>
<section>
<section id="slide-sec-2">
<h2 id="org7080fbd"><span class="section-number-2">2</span> A workshop célja</h2>
<h2 id="org79fc7b0"><span class="section-number-2">2</span> A workshop célja</h2>
<ol>
<li>modell futtatása,</li>
<li>eredmények ábrázolása,</li>
@ -96,7 +96,7 @@
</section>
<section>
<section id="slide-sec-3">
<h2 id="orgf0cba9e"><span class="section-number-2">3</span> A modell input-output kezelése</h2>
<h2 id="org6d1c165"><span class="section-number-2">3</span> A modell input-output kezelése</h2>
<table border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides" class="kanyad">
@ -114,7 +114,7 @@
<tbody>
<tr>
<td class="org-left">meteorológia (mtc43)</td>
<td class="org-left">széntárazók állapotai</td>
<td class="org-left">széntározók állapotai</td>
</tr>
<tr>
@ -141,7 +141,7 @@
</section>
<section id="slide-sec-3-1">
<h3 id="org392228f"><span class="section-number-3">3.1</span> Az ini file feladatai</h3>
<h3 id="orgefb272d"><span class="section-number-3">3.1</span> Az ini file feladatai</h3>
<ul>
<li>Vezérlés</li>
<li>Helyspecifikus adatok szolgáltatása</li>
@ -151,11 +151,11 @@
</section>
<section id="slide-sec-3-2">
<h3 id="org1c90660"><span class="section-number-3">3.2</span> Az epc file feladatai</h3>
<h3 id="org65488ce"><span class="section-number-3">3.2</span> Az epc file feladatai</h3>
</section>
<section id="slide-sec-3-3">
<h3 id="orgfb3dc42"><span class="section-number-3">3.3</span> További fájlok</h3>
<h3 id="org4209b4f"><span class="section-number-3">3.3</span> További fájlok</h3>
<ul>
<li>Meteorológiai (mtc43)</li>
<li>CO2</li>
@ -167,20 +167,20 @@
</section>
<section>
<section id="slide-sec-4">
<h2 id="org95cb610"><span class="section-number-2">4</span> Input adatok</h2>
<h2 id="orgb484aea"><span class="section-number-2">4</span> Input adatok</h2>
<div class="outline-text-2" id="text-4">
</div>
</section>
<section id="slide-sec-4-1">
<h3 id="org150ce0a"><span class="section-number-3">4.1</span> Helyszín: Hegyhátsál</h3>
<h3 id="orgef8407f"><span class="section-number-3">4.1</span> Helyszín: Hegyhátsál</h3>
</section>
<section id="slide-sec-4-2">
<h3 id="orga7f72bd"><span class="section-number-3">4.2</span> Meteorológia</h3>
<h3 id="org2c5d18c"><span class="section-number-3">4.2</span> Meteorológia</h3>
</section>
<section id="slide-sec-4-3">
<h3 id="org18657a2"><span class="section-number-3">4.3</span> Meteorológia: csapadék</h3>
<h3 id="org23e489c"><span class="section-number-3">4.3</span> Meteorológia: csapadék</h3>
<div class="figure">
<p><img src="./hegyhatsal/meteorology1.png" alt="meteorology1.png" />
@ -189,7 +189,7 @@
</section>
<section id="slide-sec-4-4">
<h3 id="orgc13ad43"><span class="section-number-3">4.4</span> Meteorológia: nappali átlaghőmérséklet</h3>
<h3 id="org2f3404e"><span class="section-number-3">4.4</span> Meteorológia: nappali átlaghőmérséklet</h3>
<div class="figure">
<p><img src="./hegyhatsal/meteorology2.png" alt="meteorology2.png" />
@ -200,9 +200,9 @@
</section>
<section>
<section id="slide-sec-5">
<h2 id="orgfa7e8e6"><span class="section-number-2">5</span> Kérdések</h2>
<h2 id="org0e0b86b"><span class="section-number-2">5</span> Kérdések</h2>
<ol>
<li>Milyen hatásai lehetnek a termésre/GPP-re, illetve LAIRA a jövőbeli lehetséges klimatikus változásoknak?</li>
<li>Milyen hatásai lehetnek a termésre/GPP-re, illetve LAI-ra a jövőbeli lehetséges klimatikus változásoknak?</li>
<li>Mennyi műtrágyát használjunk?</li>
<li>Adott helyen milyen ökofiziológiai paraméterrel bíró (kukorica/búza/\(\dots\)) fajtákat érdemes termesztenünk?</li>
@ -212,44 +212,44 @@
</section>
<section>
<section id="slide-sec-6">
<h2 id="orgb84c0a9"><span class="section-number-2">6</span> RBBGCMuso használata</h2>
<h2 id="org4429a7f"><span class="section-number-2">6</span> RBBGCMuso használata</h2>
<div class="outline-text-2" id="text-6">
</div>
</section>
<section id="slide-sec-6-1">
<h3 id="org20c82d0"><span class="section-number-3">6.1</span> devtools telepítése</h3>
<h3 id="orge01918d"><span class="section-number-3">6.1</span> devtools telepítése</h3>
<div class="org-src-container">
<pre class="src src-R">install.packages(<span style="color: #1D8B15;">"devtools"</span>)
<pre class="src src-R">install.packages(<span style="color: #ff1493;">"devtools"</span>)
</pre>
</div>
</section>
<section id="slide-sec-6-2">
<h3 id="org9084ab8"><span class="section-number-3">6.2</span> RBBGCMuso telepítése</h3>
<h3 id="org5e4465d"><span class="section-number-3">6.2</span> RBBGCMuso telepítése</h3>
<div class="org-src-container">
<pre class="src src-R">devtools::install_github(<span style="color: #1D8B15;">"hollorol/RBBGCMuso/RGBBCMuso"</span>)
<pre class="src src-R">devtools::install_github(<span style="color: #ff1493;">"hollorol/RBBGCMuso/RGBBCMuso"</span>)
</pre>
</div>
</section>
<section id="slide-sec-6-3">
<h3 id="org4526703"><span class="section-number-3">6.3</span> csomagok betöltése, munkakönyvtár beállítása:</h3>
<h3 id="org3bf74b7"><span class="section-number-3">6.3</span> csomagok betöltése, munkakönyvtár beállítása:</h3>
<div class="org-src-container">
<pre class="src src-R"><span style="color: #00d1e0;">library</span>(RBBGCMuso)
<span style="color: #00d1e0;">library</span>(ggplot2)
<pre class="src src-R"><span style="color: #7fffd4;">library</span>(RBBGCMuso)
<span style="color: #7fffd4;">library</span>(ggplot2)
</pre>
</div>
</section>
<section id="slide-sec-6-4">
<h3 id="org398055c"><span class="section-number-3">6.4</span> futtatás előkészítése: <i>setupMuso()</i></h3>
<h3 id="orgaccd728"><span class="section-number-3">6.4</span> futtatás előkészítése: <i>setupMuso()</i></h3>
<div class="org-src-container">
<pre class="src src-R">beallitasok <span style="color: #00d1e0;">&lt;-</span> setupMuso()
<pre class="src src-R">beallitasok <span style="color: #7fffd4;">&lt;-</span> setupMuso()
</pre>
</div>
@ -259,10 +259,10 @@
</section>
<section id="slide-sec-6-5">
<h3 id="org2ef94c5"><span class="section-number-3">6.5</span> modellfuttatás: <i>calibMuso()</i></h3>
<h3 id="org1545857"><span class="section-number-3">6.5</span> modellfuttatás: <i>calibMuso()</i></h3>
<div class="org-src-container">
<pre class="src src-R">kimenet <span style="color: #00d1e0;">&lt;-</span> calibMuso(settings = beallitasok,skipSpinup=<span style="color: #eab700;">TRUE</span>)
<pre class="src src-R">kimenet <span style="color: #7fffd4;">&lt;-</span> calibMuso(settings = beallitasok,skipSpinup=<span style="color: #8470ff;">TRUE</span>)
round(kimenet[1:6,1:2],digits=2)
</pre>
</div>
@ -316,10 +316,10 @@ round(kimenet[1:6,1:2],digits=2)
</section>
<section id="slide-sec-6-6">
<h3 id="orgf8572ca"><span class="section-number-3">6.6</span> kimeneti adatok ábrázolása (első verzió)</h3>
<h3 id="org74550ac"><span class="section-number-3">6.6</span> kimeneti adatok ábrázolása (első verzió)</h3>
<div class="org-src-container">
<pre class="src src-R">plot(kimenet[,<span style="color: #1D8B15;">"daily_gpp"</span>])
<pre class="src src-R">plot(kimenet[,<span style="color: #ff1493;">"daily_gpp"</span>])
</pre>
</div>
@ -331,14 +331,14 @@ round(kimenet[1:6,1:2],digits=2)
</section>
<section id="slide-sec-6-7">
<h3 id="org49a793e"><span class="section-number-3">6.7</span> Ügyelvén az esztétikára:</h3>
<h3 id="org6301080"><span class="section-number-3">6.7</span> Ügyelvén az esztétikára:</h3>
<div class="org-src-container">
<pre class="src src-R"><span style="color: #00d1e0;">par</span>(mar=c(2.2,5,1.5,0.5))
plot(y=kimenet[,<span style="color: #1D8B15;">"daily_gpp"</span>],
x=as.Date(rownames(kimenet),<span style="color: #1D8B15;">"%d.%m.%Y"</span>), xlab=<span style="color: #1D8B15;">""</span>,
ylab = expression(paste(<span style="color: #1D8B15;">"daily GPP ["</span>,kgC,m^-2,<span style="color: #1D8B15;">"]"</span>)),
type=<span style="color: #1D8B15;">"l"</span>, col=<span style="color: #1D8B15;">"blue"</span>, lwd=<span style="color: #1D8B15;">"1.8"</span>)
<pre class="src src-R">par(mar=c(2.2,5,1.5,0.5))
plot(y=kimenet[,<span style="color: #ff1493;">"daily_gpp"</span>],
x=as.Date(rownames(kimenet),<span style="color: #ff1493;">"%d.%m.%Y"</span>), xlab=<span style="color: #ff1493;">""</span>,
ylab = expression(paste(<span style="color: #ff1493;">"daily GPP ["</span>,kgC,m^-2,<span style="color: #ff1493;">"]"</span>)),
type=<span style="color: #ff1493;">"l"</span>, col=<span style="color: #ff1493;">"blue"</span>, lwd=<span style="color: #ff1493;">"1.8"</span>)
</pre>
</div>
@ -350,10 +350,10 @@ plot(y=kimenet[,<span style="color: #1D8B15;">"daily_gpp"</span>],
</section>
<section id="slide-sec-6-8">
<h3 id="org6906261"><span class="section-number-3">6.8</span> Mindez sokkal egyszerűbben</h3>
<h3 id="orgd555a31"><span class="section-number-3">6.8</span> Mindez sokkal egyszerűbben</h3>
<div class="org-src-container">
<pre class="src src-R">plotMuso(variable=<span style="color: #1D8B15;">"daily_gpp"</span>)
<pre class="src src-R">plotMuso(variable=<span style="color: #ff1493;">"daily_gpp"</span>)
</pre>
</div>
@ -365,11 +365,11 @@ plot(y=kimenet[,<span style="color: #1D8B15;">"daily_gpp"</span>],
</section>
<section id="slide-sec-6-9">
<h3 id="org95efe20"><span class="section-number-3">6.9</span> Egy apró javítás</h3>
<h3 id="org6f04a19"><span class="section-number-3">6.9</span> Egy apró javítás</h3>
<div class="org-src-container">
<pre class="src src-R">plotMuso(variable=<span style="color: #1D8B15;">"daily_gpp"</span>)+
labs(y=expression(paste(<span style="color: #1D8B15;">"daily GPP ["</span>,kgC,m^-2,<span style="color: #1D8B15;">"]"</span>)))
<pre class="src src-R">plotMuso(variable=<span style="color: #ff1493;">"daily_gpp"</span>)+
labs(y=expression(paste(<span style="color: #ff1493;">"daily GPP ["</span>,kgC,m^-2,<span style="color: #ff1493;">"]"</span>)))
</pre>
</div>
@ -381,7 +381,7 @@ plot(y=kimenet[,<span style="color: #1D8B15;">"daily_gpp"</span>],
</section>
<section id="slide-sec-6-10">
<h3 id="org6709bbb"><span class="section-number-3">6.10</span> <i>musoMappingFind()</i></h3>
<h3 id="org2df3db9"><span class="section-number-3">6.10</span> <i>musoMappingFind()</i></h3>
<ul>
<li class="fragment appear">Honnan tudjuk, hogy mi is egy általános változónak a neve?
<ul>
@ -393,10 +393,10 @@ plot(y=kimenet[,<span style="color: #1D8B15;">"daily_gpp"</span>],
</ul>
</section>
<section id="slide-sec-6-11">
<h3 id="orgc56d554"><span class="section-number-3">6.11</span> <i>musoMappingFind()</i></h3>
<h3 id="org871982c"><span class="section-number-3">6.11</span> <i>musoMappingFind()</i></h3>
<div class="org-src-container">
<pre class="src src-R">musoMappingFind(<span style="color: #1D8B15;">"yield"</span>)
<pre class="src src-R">musoMappingFind(<span style="color: #ff1493;">"yield"</span>)
</pre>
</div>
@ -418,11 +418,11 @@ plot(y=kimenet[,<span style="color: #1D8B15;">"daily_gpp"</span>],
</section>
<section id="slide-sec-6-12">
<h3 id="org6e16fa6"><span class="section-number-3">6.12</span> Nézzük meg, hogy hogyan változott a termés 2013 és 2017 között!</h3>
<h3 id="org724c21d"><span class="section-number-3">6.12</span> Nézzük meg, hogy hogyan változott a termés 2013 és 2017 között!</h3>
<div class="org-src-container">
<pre class="src src-R">plotMuso(variable=<span style="color: #1D8B15;">"cum_yieldC_HRV"</span>)+
labs(y=<span style="color: #1D8B15;">"Term&#233;s [t/ha]"</span>)
<pre class="src src-R">plotMuso(variable=<span style="color: #ff1493;">"cum_yieldC_HRV"</span>)+
labs(y=<span style="color: #ff1493;">"Term&#233;s [t/ha]"</span>)
</pre>
</div>
@ -434,11 +434,11 @@ plot(y=kimenet[,<span style="color: #1D8B15;">"daily_gpp"</span>],
</section>
<section id="slide-sec-6-13">
<h3 id="orga3a21ca"><span class="section-number-3">6.13</span> Ábrázoljuk inkább az éves maximumokat!</h3>
<h3 id="org78a8a9a"><span class="section-number-3">6.13</span> Ábrázoljuk inkább az éves maximumokat!</h3>
<div class="org-src-container">
<pre class="src src-R">plotMuso(variable=<span style="color: #1D8B15;">"cum_yieldC_HRV"</span>, timeFrame=<span style="color: #1D8B15;">"year"</span>, groupFun=max)+
labs(y=<span style="color: #1D8B15;">"Term&#233;s [t/ha]"</span>)
<pre class="src src-R">plotMuso(variable=<span style="color: #ff1493;">"cum_yieldC_HRV"</span>, timeFrame=<span style="color: #ff1493;">"year"</span>, groupFun=max)+
labs(y=<span style="color: #ff1493;">"Term&#233;s [t/ha]"</span>)
</pre>
</div>
@ -450,22 +450,22 @@ plot(y=kimenet[,<span style="color: #1D8B15;">"daily_gpp"</span>],
</section>
<section id="slide-sec-6-14">
<h3 id="org928dbf1"><span class="section-number-3">6.14</span> mentsük el az alapábránkat!</h3>
<h3 id="orgba1ebdc"><span class="section-number-3">6.14</span> mentsük el az alapábránkat!</h3>
<div class="org-src-container">
<pre class="src src-R">termesAlap <span style="color: #00d1e0;">&lt;-</span> plotMuso(variable=<span style="color: #1D8B15;">"cum_yieldC_HRV"</span>, timeFrame=<span style="color: #1D8B15;">"year"</span>, groupFun=max)+
labs(y=<span style="color: #1D8B15;">"Term&#233;s [t/ha]"</span>)
<pre class="src src-R">termesAlap <span style="color: #7fffd4;">&lt;-</span> plotMuso(variable=<span style="color: #ff1493;">"cum_yieldC_HRV"</span>, timeFrame=<span style="color: #ff1493;">"year"</span>, groupFun=max)+
labs(y=<span style="color: #ff1493;">"Term&#233;s [t/ha]"</span>)
</pre>
</div>
</section>
<section id="slide-sec-6-15">
<h3 id="orgcb1ec58"><span class="section-number-3">6.15</span> Nézzük meg, majd mentsük le a LAI-t is!</h3>
<h3 id="org95097c5"><span class="section-number-3">6.15</span> Nézzük meg, majd mentsük le a LAI-t is!</h3>
<div class="org-src-container">
<pre class="src src-R">LAIAlap <span style="color: #00d1e0;">&lt;-</span> plotMuso(variable=<span style="color: #1D8B15;">"proj_lai"</span>)+
<pre class="src src-R">LAIAlap <span style="color: #7fffd4;">&lt;-</span> plotMuso(variable=<span style="color: #ff1493;">"proj_lai"</span>)+
labs(y=expression(
paste(<span style="color: #1D8B15;">"Lev&#233;lfel&#252;leti index "</span>,m^2m^-2)))
paste(<span style="color: #ff1493;">"Lev&#233;lfel&#252;leti index "</span>,m^2m^-2)))
LAIAlap
</pre>
</div>
@ -478,11 +478,11 @@ LAIAlap
</section>
<section id="slide-sec-6-16">
<h3 id="org0951963"><span class="section-number-3">6.16</span> GPP alap</h3>
<h3 id="org84a312b"><span class="section-number-3">6.16</span> GPP alap</h3>
<div class="org-src-container">
<pre class="src src-R">GPPAlap <span style="color: #00d1e0;">&lt;-</span> plotMuso(variable=<span style="color: #1D8B15;">"daily_gpp"</span>)+
labs(y=expression(paste(<span style="color: #1D8B15;">"daily GPP ["</span>,kgC,m^-2,<span style="color: #1D8B15;">"]"</span>)))
<pre class="src src-R">GPPAlap <span style="color: #7fffd4;">&lt;-</span> plotMuso(variable=<span style="color: #ff1493;">"daily_gpp"</span>)+
labs(y=expression(paste(<span style="color: #ff1493;">"daily GPP ["</span>,kgC,m^-2,<span style="color: #ff1493;">"]"</span>)))
GPPAlap
</pre>
</div>
@ -495,29 +495,29 @@ GPPAlap
</section>
<section id="slide-sec-6-17">
<h3 id="orga5aa63f"><span class="section-number-3">6.17</span> Gyep Biomassza</h3>
<h3 id="org293e0c7"><span class="section-number-3">6.17</span> Gyep Biomassza</h3>
<div class="org-src-container">
<pre class="src src-R">termesAlap_gyep <span style="color: #00d1e0;">&lt;-</span> plotMuso(variable = <span style="color: #1D8B15;">"leafc"</span>,
timeFrame = <span style="color: #1D8B15;">"year"</span>, groupFun=sum, skipSpinup=<span style="color: #eab700;">FALSE</span>)
<pre class="src src-R">termesAlap_gyep <span style="color: #7fffd4;">&lt;-</span> plotMuso(variable = <span style="color: #ff1493;">"leafc"</span>,
timeFrame = <span style="color: #ff1493;">"year"</span>, groupFun=sum, skipSpinup=<span style="color: #8470ff;">FALSE</span>)
</pre>
</div>
</section>
<section id="slide-sec-6-18">
<h3 id="org62628f7"><span class="section-number-3">6.18</span> Gyep LAI</h3>
<h3 id="org0445e53"><span class="section-number-3">6.18</span> Gyep LAI</h3>
<div class="org-src-container">
<pre class="src src-R">LAIAlap_gyep <span style="color: #00d1e0;">&lt;-</span> plotMuso(variable = <span style="color: #1D8B15;">"proj_lai"</span>, skipSpinup=<span style="color: #eab700;">FALSE</span>)
<pre class="src src-R">LAIAlap_gyep <span style="color: #7fffd4;">&lt;-</span> plotMuso(variable = <span style="color: #ff1493;">"proj_lai"</span>, skipSpinup=<span style="color: #8470ff;">FALSE</span>)
</pre>
</div>
</section>
<section id="slide-sec-6-19">
<h3 id="org18c7b84"><span class="section-number-3">6.19</span> Gyep GPP</h3>
<h3 id="orgb366c1f"><span class="section-number-3">6.19</span> Gyep GPP</h3>
<div class="org-src-container">
<pre class="src src-R">GPPAlap_gyep<span style="color: #00d1e0;">&lt;-</span>plotMuso(variable = <span style="color: #1D8B15;">"daily_gpp"</span>)
<pre class="src src-R">GPPAlap_gyep<span style="color: #7fffd4;">&lt;-</span>plotMuso(variable = <span style="color: #ff1493;">"daily_gpp"</span>)
</pre>
</div>
@ -525,12 +525,12 @@ GPPAlap
</section>
<section>
<section id="slide-sec-7">
<h2 id="org6aa1dd0"><span class="section-number-2">7</span> Kísérletek</h2>
<h2 id="orgd60249e"><span class="section-number-2">7</span> Kísérletek</h2>
<div class="outline-text-2" id="text-7">
</div>
</section>
<section id="slide-sec-7-1">
<h3 id="org62a7771"><span class="section-number-3">7.1</span> Vetési idő</h3>
<h3 id="org1d5b532"><span class="section-number-3">7.1</span> Vetési idő</h3>
<div class="figure">
<p><img src="./iniMod.png" alt="iniMod.png" />
@ -538,13 +538,13 @@ GPPAlap
</div>
</section>
<section id="slide-sec-7-2">
<h3 id="org3db7080"><span class="section-number-3">7.2</span> Vetési idő- Termés</h3>
<h3 id="org6c96d5d"><span class="section-number-3">7.2</span> Vetési idő- Termés</h3>
<div class="org-src-container">
<pre class="src src-R">TermesValtozas_vetesido <span style="color: #00d1e0;">&lt;-</span> termesAlap+
plotMuso(variable = <span style="color: #1D8B15;">"cum_yieldC_HRV"</span>,
timeFrame = <span style="color: #1D8B15;">"year"</span>, groupFun=max,
colour = <span style="color: #1D8B15;">"brown"</span>, layerPlot = <span style="color: #eab700;">TRUE</span>, skipSpinup=<span style="color: #eab700;">FALSE</span>)
<pre class="src src-R">TermesValtozas_vetesido <span style="color: #7fffd4;">&lt;-</span> termesAlap+
plotMuso(variable = <span style="color: #ff1493;">"cum_yieldC_HRV"</span>,
timeFrame = <span style="color: #ff1493;">"year"</span>, groupFun=max,
colour = <span style="color: #ff1493;">"brown"</span>, layerPlot = <span style="color: #8470ff;">TRUE</span>, skipSpinup=<span style="color: #8470ff;">FALSE</span>)
TermesValtozas_vetesido
</pre>
</div>
@ -557,12 +557,12 @@ TermesValtozas_vetesido
</section>
<section id="slide-sec-7-3">
<h3 id="org545a1de"><span class="section-number-3">7.3</span> Vetési idő- LAI</h3>
<h3 id="orgd8c9eef"><span class="section-number-3">7.3</span> Vetési idő- LAI</h3>
<div class="org-src-container">
<pre class="src src-R">LAIValtozas_vetesido <span style="color: #00d1e0;">&lt;-</span> LAIAlap+
plotMuso(variable = <span style="color: #1D8B15;">"proj_lai"</span>,
colour = <span style="color: #1D8B15;">"brown"</span>, layerPlot = <span style="color: #eab700;">TRUE</span>, skipSpinup=<span style="color: #eab700;">FALSE</span>)
<pre class="src src-R">LAIValtozas_vetesido <span style="color: #7fffd4;">&lt;-</span> LAIAlap+
plotMuso(variable = <span style="color: #ff1493;">"proj_lai"</span>,
colour = <span style="color: #ff1493;">"brown"</span>, layerPlot = <span style="color: #8470ff;">TRUE</span>, skipSpinup=<span style="color: #8470ff;">FALSE</span>)
LAIValtozas_vetesido
</pre>
</div>
@ -575,12 +575,12 @@ LAIValtozas_vetesido
</section>
<section id="slide-sec-7-4">
<h3 id="org83768a2"><span class="section-number-3">7.4</span> Vetési idő- GPP</h3>
<h3 id="orga956fb0"><span class="section-number-3">7.4</span> Vetési idő- GPP</h3>
<div class="org-src-container">
<pre class="src src-R">GPPValtozas_vetesido <span style="color: #00d1e0;">&lt;-</span> GPPAlap +
plotMuso(variable = <span style="color: #1D8B15;">"daily_gpp"</span>,
colour = <span style="color: #1D8B15;">"brown"</span>, layerPlot = <span style="color: #eab700;">TRUE</span>, skipSpinup=<span style="color: #eab700;">FALSE</span>)
<pre class="src src-R">GPPValtozas_vetesido <span style="color: #7fffd4;">&lt;-</span> GPPAlap +
plotMuso(variable = <span style="color: #ff1493;">"daily_gpp"</span>,
colour = <span style="color: #ff1493;">"brown"</span>, layerPlot = <span style="color: #8470ff;">TRUE</span>, skipSpinup=<span style="color: #8470ff;">FALSE</span>)
GPPValtozas_vetesido
</pre>
</div>
@ -593,7 +593,7 @@ GPPValtozas_vetesido
</section>
<section id="slide-sec-7-5">
<h3 id="org9ac02c9"><span class="section-number-3">7.5</span> Műtrágyázás</h3>
<h3 id="org4d19886"><span class="section-number-3">7.5</span> Műtrágyázás</h3>
<div class="figure">
<p><img src="./iniMod1.png" alt="iniMod1.png" />
@ -602,13 +602,13 @@ GPPValtozas_vetesido
</section>
<section id="slide-sec-7-6">
<h3 id="org148608d"><span class="section-number-3">7.6</span> Műtrágyázás- Termés</h3>
<h3 id="orgaa74b4c"><span class="section-number-3">7.6</span> Műtrágyázás- Termés</h3>
<div class="org-src-container">
<pre class="src src-R">TermesValtozas_fertilP <span style="color: #00d1e0;">&lt;-</span> termesAlap+
plotMuso(variable = <span style="color: #1D8B15;">"cum_yieldC_HRV"</span>,
timeFrame = <span style="color: #1D8B15;">"year"</span>, groupFun=max,
colour = <span style="color: #1D8B15;">"brown"</span>, layerPlot = <span style="color: #eab700;">TRUE</span>, skipSpinup=<span style="color: #eab700;">FALSE</span>)
<pre class="src src-R">TermesValtozas_fertilP <span style="color: #7fffd4;">&lt;-</span> termesAlap+
plotMuso(variable = <span style="color: #ff1493;">"cum_yieldC_HRV"</span>,
timeFrame = <span style="color: #ff1493;">"year"</span>, groupFun=max,
colour = <span style="color: #ff1493;">"brown"</span>, layerPlot = <span style="color: #8470ff;">TRUE</span>, skipSpinup=<span style="color: #8470ff;">FALSE</span>)
TermesValtozas_fertilP
</pre>
</div>
@ -621,12 +621,12 @@ TermesValtozas_fertilP
</section>
<section id="slide-sec-7-7">
<h3 id="orga55ad47"><span class="section-number-3">7.7</span> Műtrágyázás - LAI</h3>
<h3 id="org7ef229d"><span class="section-number-3">7.7</span> Műtrágyázás - LAI</h3>
<div class="org-src-container">
<pre class="src src-R">LAIValtozas_fertilP <span style="color: #00d1e0;">&lt;-</span> LAIAlap+
plotMuso(variable = <span style="color: #1D8B15;">"proj_lai"</span>,
colour = <span style="color: #1D8B15;">"brown"</span>, layerPlot = <span style="color: #eab700;">TRUE</span>, skipSpinup=<span style="color: #eab700;">FALSE</span>)
<pre class="src src-R">LAIValtozas_fertilP <span style="color: #7fffd4;">&lt;-</span> LAIAlap+
plotMuso(variable = <span style="color: #ff1493;">"proj_lai"</span>,
colour = <span style="color: #ff1493;">"brown"</span>, layerPlot = <span style="color: #8470ff;">TRUE</span>, skipSpinup=<span style="color: #8470ff;">FALSE</span>)
LAIValtozas_fertilP
</pre>
</div>
@ -639,12 +639,12 @@ LAIValtozas_fertilP
</section>
<section id="slide-sec-7-8">
<h3 id="org084a9c2"><span class="section-number-3">7.8</span> Műtrágyázás - GPP</h3>
<h3 id="orgce3202e"><span class="section-number-3">7.8</span> Műtrágyázás - GPP</h3>
<div class="org-src-container">
<pre class="src src-R">GPPValtozas_fertilP <span style="color: #00d1e0;">&lt;-</span> GPPAlap +
plotMuso(variable = <span style="color: #1D8B15;">"daily_gpp"</span>,
colour = <span style="color: #1D8B15;">"brown"</span>, layerPlot = <span style="color: #eab700;">TRUE</span>, skipSpinup=<span style="color: #eab700;">FALSE</span>)
<pre class="src src-R">GPPValtozas_fertilP <span style="color: #7fffd4;">&lt;-</span> GPPAlap +
plotMuso(variable = <span style="color: #ff1493;">"daily_gpp"</span>,
colour = <span style="color: #ff1493;">"brown"</span>, layerPlot = <span style="color: #8470ff;">TRUE</span>, skipSpinup=<span style="color: #8470ff;">FALSE</span>)
GPPValtozas_fertilP
</pre>
</div>
@ -657,13 +657,13 @@ GPPValtozas_fertilP
</section>
<section id="slide-sec-7-9">
<h3 id="org88efc10"><span class="section-number-3">7.9</span> Szárazodás - Termés</h3>
<h3 id="org1c08e9e"><span class="section-number-3">7.9</span> Szárazodás - Termés</h3>
<div class="org-src-container">
<pre class="src src-R">TermesValtozas_szarazodas <span style="color: #00d1e0;">&lt;-</span> termesAlap_gyep+
plotMuso(variable = <span style="color: #1D8B15;">"leafc"</span>,
timeFrame = <span style="color: #1D8B15;">"year"</span>, groupFun=sum,
colour = <span style="color: #1D8B15;">"brown"</span>, layerPlot = <span style="color: #eab700;">TRUE</span>, skipSpinup=<span style="color: #eab700;">FALSE</span>)
<pre class="src src-R">TermesValtozas_szarazodas <span style="color: #7fffd4;">&lt;-</span> termesAlap_gyep+
plotMuso(variable = <span style="color: #ff1493;">"leafc"</span>,
timeFrame = <span style="color: #ff1493;">"year"</span>, groupFun=sum,
colour = <span style="color: #ff1493;">"brown"</span>, layerPlot = <span style="color: #8470ff;">TRUE</span>, skipSpinup=<span style="color: #8470ff;">FALSE</span>)
TermesValtozas_szarazodas
</pre>
</div>
@ -676,12 +676,12 @@ TermesValtozas_szarazodas
</section>
<section id="slide-sec-7-10">
<h3 id="orgb66addc"><span class="section-number-3">7.10</span> Szárazodás - LAI</h3>
<h3 id="org55d9180"><span class="section-number-3">7.10</span> Szárazodás - LAI</h3>
<div class="org-src-container">
<pre class="src src-R">LAIValtozas_szarazodas <span style="color: #00d1e0;">&lt;-</span> LAIAlap_gyep+
plotMuso(variable = <span style="color: #1D8B15;">"proj_lai"</span>,
colour = <span style="color: #1D8B15;">"brown"</span>, layerPlot = <span style="color: #eab700;">TRUE</span>, skipSpinup=<span style="color: #eab700;">FALSE</span>)
<pre class="src src-R">LAIValtozas_szarazodas <span style="color: #7fffd4;">&lt;-</span> LAIAlap_gyep+
plotMuso(variable = <span style="color: #ff1493;">"proj_lai"</span>,
colour = <span style="color: #ff1493;">"brown"</span>, layerPlot = <span style="color: #8470ff;">TRUE</span>, skipSpinup=<span style="color: #8470ff;">FALSE</span>)
LAIValtozas_szarazodas
</pre>
</div>
@ -695,12 +695,12 @@ LAIValtozas_szarazodas
</section>
<section id="slide-sec-7-11">
<h3 id="orgf48dec6"><span class="section-number-3">7.11</span> Szárazodás - GPP</h3>
<h3 id="orge063c9c"><span class="section-number-3">7.11</span> Szárazodás - GPP</h3>
<div class="org-src-container">
<pre class="src src-R">GPPValtozas_szarazodas <span style="color: #00d1e0;">&lt;-</span> GPPAlap_gyep +
plotMuso(variable = <span style="color: #1D8B15;">"daily_gpp"</span>,
colour = <span style="color: #1D8B15;">"brown"</span>, layerPlot = <span style="color: #eab700;">TRUE</span>, skipSpinup=<span style="color: #eab700;">FALSE</span>)
<pre class="src src-R">GPPValtozas_szarazodas <span style="color: #7fffd4;">&lt;-</span> GPPAlap_gyep +
plotMuso(variable = <span style="color: #ff1493;">"daily_gpp"</span>,
colour = <span style="color: #ff1493;">"brown"</span>, layerPlot = <span style="color: #8470ff;">TRUE</span>, skipSpinup=<span style="color: #8470ff;">FALSE</span>)
GPPValtozas_szarazodas
</pre>
</div>
@ -715,22 +715,22 @@ GPPValtozas_szarazodas
</section>
<section>
<section id="slide-sec-8">
<h2 id="org9e2525f"><span class="section-number-2">8</span> AgroMo-<i>Lite</i></h2>
<h2 id="org2ecbf08"><span class="section-number-2">8</span> AgroMo-<i>Lite</i></h2>
<div class="outline-text-2" id="text-8">
</div>
</section>
<section id="slide-sec-8-1">
<h3 id="org3b485f6"><span class="section-number-3">8.1</span> Telepítés</h3>
<h3 id="orgf9cf772"><span class="section-number-3">8.1</span> Telepítés</h3>
<div class="org-src-container">
<pre class="src src-R"><span style="color: #00d1e0;">setwd</span>(<span style="color: #1D8B15;">"../hegyhatsal"</span>)
<pre class="src src-R">setwd(<span style="color: #ff1493;">"../hegyhatsal"</span>)
</pre>
</div>
<div class="org-src-container">
<pre class="src src-R">intall_github(<span style="color: #1D8B15;">"hollorol/AgroMoLite"</span>)
<span style="color: #00d1e0;">library</span>(AgroMoLite)
<pre class="src src-R">intall_github(<span style="color: #ff1493;">"hollorol/AgroMoLite"</span>)
<span style="color: #7fffd4;">library</span>(AgroMoLite)
</pre>
</div>
@ -744,7 +744,7 @@ GPPValtozas_szarazodas
</section>
<section id="slide-sec-8-2" data-background="./titleimage.png">
<h3 id="org1e3fa62"><span class="section-number-3">8.2</span> Köszönöm, hogy itt voltak!</h3>
<h3 id="orgfaf79a1"><span class="section-number-3">8.2</span> Köszönöm, hogy itt voltak!</h3>
</section>
</section>
</div>