getBackOldMuso
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Roland Hollós
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[submodule "docs/reveal.js"]
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<!DOCTYPE html>
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<html lang="hu">
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<head>
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<meta charset="utf-8"/>
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<title>Szimuláció RBBGCMuso-val</title>
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<meta name="author" content="(Hollós Roland)"/>
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<style type="text/css">
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.underline { text-decoration: underline; }
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</style>
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<link rel="stylesheet" href="./reveal.js/css/reveal.css"/>
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<link rel="stylesheet" href="./reveal.js/css/theme/moon.css" id="theme"/>
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<!-- If the query includes 'print-pdf', include the PDF print sheet -->
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<script>
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link.rel = 'stylesheet';
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</script>
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</head>
|
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<body>
|
||||
<div class="reveal">
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||||
<div class="slides">
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||||
<section id="sec-title-slide"><h1 class="title">Szimuláció RBBGCMuso-val</h1><h2 class="author">Hollós Roland</h2><h2 class="date">2018. 09. 27</h2>
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</section>
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||||
<section id="table-of-contents">
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||||
<div id="table-of-contents">
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||||
<h2>Tartalomjegyzék</h2>
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||||
<div id="text-table-of-contents">
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||||
<ul>
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||||
<li><a href="#/slide-org3a18f38">1. Bevezetés</a></li>
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||||
<li><a href="#/slide-org5386a01">2. Kérdésfeltevés</a></li>
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||||
<li><a href="#/slide-org2f354e5">3. RBBGCMuso használata</a></li>
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</ul>
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||||
</div>
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||||
</div>
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||||
</section>
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||||
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||||
<section>
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||||
<section id="slide-sec-1">
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<h2 id="org3a18f38"><span class="section-number-2">1</span> Bevezetés</h2>
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||||
</section>
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||||
</section>
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||||
<section>
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||||
<section id="slide-sec-2">
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<h2 id="org5386a01"><span class="section-number-2">2</span> Kérdésfeltevés</h2>
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</section>
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||||
</section>
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<section>
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<section id="slide-sec-3">
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<h2 id="org2f354e5"><span class="section-number-2">3</span> RBBGCMuso használata</h2>
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<div class="outline-text-2" id="text-3">
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</div>
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</section>
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<section id="slide-sec-3-1">
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<h3 id="org0fe0db7"><span class="section-number-3">3.1</span> devtools telepítése</h3>
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<div class="org-src-container">
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<pre class="src src-R">install.packages(<span style="color: #ff1493;">"devtools"</span>)
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</pre>
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</div>
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</section>
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<section id="slide-sec-3-2">
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<h3 id="org2b1e6f5"><span class="section-number-3">3.2</span> RBBGCMuso telepítése</h3>
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<div class="org-src-container">
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<pre class="src src-R">devtools::install_github(<span style="color: #ff1493;">"hollorol/RBBGCMuso/RGBBCMuso"</span>)
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</pre>
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</div>
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</section>
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<section id="slide-sec-3-3">
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<h3 id="org0a30b93"><span class="section-number-3">3.3</span> csomagok betöltése, munkakönyvtár beállítása:</h3>
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<div class="org-src-container">
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<pre class="src src-R"><span style="color: #7fffd4;">library</span>(RBBGCMuso)
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<span style="color: #7fffd4;">library</span>(ggplot2)
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</pre>
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</div>
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</section>
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<section id="slide-sec-3-4">
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<h3 id="orgbdd1806"><span class="section-number-3">3.4</span> futtatás előkészítése: <i>setupMuso()</i></h3>
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<div class="org-src-container">
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<pre class="src src-R">beallitasok <span style="color: #7fffd4;"><-</span> setupMuso()
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</pre>
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</div>
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</section>
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<section id="slide-sec-3-5">
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<h3 id="org3fc27f2"><span class="section-number-3">3.5</span> modellfuttatás: <i>calibMuso()</i></h3>
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<div class="org-src-container">
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<pre class="src src-R">kimenet <span style="color: #7fffd4;"><-</span> calibMuso(settings = beallitasok,skipSpinup=<span style="color: #8470ff;">FALSE</span>)
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kimenet[1:6,1:2]
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</pre>
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</div>
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</section>
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<section id="slide-sec-3-6">
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<h3 id="org303dc53"><span class="section-number-3">3.6</span> kimeneti adatok ábrázolása (első verzió)</h3>
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<div class="org-src-container">
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<pre class="src src-R">plot(kimenet[,<span style="color: #ff1493;">"daily_gpp"</span>])
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</pre>
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</div>
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<div class="figure">
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<p><img src="hegyhatsal/daily_1.png" alt="daily_1.png" />
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</p>
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</div>
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</section>
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<section id="slide-sec-3-7">
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<h3 id="org4e23223"><span class="section-number-3">3.7</span> egy kicsit cicomázva:</h3>
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<div class="org-src-container">
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<pre class="src src-R">par(mar=c(5,5,4,4))
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plot(y=kimenet[,<span style="color: #ff1493;">"daily_gpp"</span>],
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x=as.Date(rownames(kimenet),<span style="color: #ff1493;">"%d.%m.%Y"</span>), xlab=<span style="color: #ff1493;">"Days"</span>,
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ylab = expression(paste(<span style="color: #ff1493;">"daily GPP ["</span>,kg[C],m^-2,<span style="color: #ff1493;">"]"</span>)),
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type=<span style="color: #ff1493;">"l"</span>, col=<span style="color: #ff1493;">"blue"</span>, lwd=<span style="color: #ff1493;">"1.8"</span>)
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</pre>
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</div>
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<div class="figure">
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<p><img src="hegyhatsal/daily_2.png" alt="daily_2.png" />
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</p>
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</div>
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</section>
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<section id="slide-sec-3-8">
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<h3 id="orgf5873fa"><span class="section-number-3">3.8</span> Mindez sokkal egyszerűbben</h3>
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<div class="org-src-container">
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<pre class="src src-R">plotMuso(variable=<span style="color: #ff1493;">"daily_gpp"</span>)
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</pre>
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</div>
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<div class="figure">
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<p><img src="hegyhatsal/daily_3.png" alt="daily_3.png" />
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</p>
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</div>
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</section>
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<section id="slide-sec-3-9">
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<h3 id="orga91d83f"><span class="section-number-3">3.9</span> Egy apró javítás</h3>
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<div class="org-src-container">
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<pre class="src src-R">plotMuso(variable=<span style="color: #ff1493;">"daily_gpp"</span>)+
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labs(y=expression(paste(<span style="color: #ff1493;">"daily GPP ["</span>,kg[C],m^-2,<span style="color: #ff1493;">"]"</span>)))
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</pre>
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</div>
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<div class="figure">
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<p><img src="hegyhatsal/daily_4.png" alt="daily_4.png" />
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</p>
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</div>
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</section>
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<section id="slide-sec-3-10">
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<h3 id="org4d08121"><span class="section-number-3">3.10</span> <i>musoMappingFind()</i></h3>
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<ul>
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<li class="fragment appear">Honnan tudjuk, hogy mi is egy általános változónak a neve?
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<ul>
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<li class="fragment appear"><a href="http://nimbus.elte.hu/bbgc/files/MUSO5b_variables.xlsx">http://nimbus.elte.hu/bbgc/files/MUSO5b_variables.xlsx</a></li>
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<li class="fragment appear"><i>musoMappingFind()</i> függvény segítségével pl.:</li>
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</ul></li>
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</ul>
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</section>
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<section id="slide-sec-3-11">
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<h3 id="org8c5a7d5"><span class="section-number-3">3.11</span> <i>musoMappingFind()</i></h3>
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<div class="org-src-container">
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<pre class="src src-R">musoMappingFind(<span style="color: #ff1493;">"yield"</span>)
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</pre>
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</div>
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<table border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
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<colgroup>
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<col class="org-right" />
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<col class="org-left" />
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</colgroup>
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<tbody>
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<tr>
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<td class="org-right">3037</td>
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<td class="org-left">cum_yieldC_HRV</td>
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</tr>
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</tbody>
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</table>
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</section>
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<section id="slide-sec-3-12">
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<h3 id="orga0292d0"><span class="section-number-3">3.12</span> Nézzük meg, hogy hogyan változott a termés 2013 és 2017 között!</h3>
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<div class="org-src-container">
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<pre class="src src-R">plotMuso(variable=<span style="color: #ff1493;">"cum_yieldC_HRV"</span>)+
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labs(y=expression(paste(<span style="color: #ff1493;">"yield ["</span>,kg[C],m^-2,<span style="color: #ff1493;">"]"</span>)))
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</pre>
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</div>
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<div class="figure">
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<p><img src="hegyhatsal/yield_base.png" alt="yield_base.png" />
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</p>
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</div>
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</section>
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<section id="slide-sec-3-13">
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<h3 id="org1d8ecbe"><span class="section-number-3">3.13</span> Mentsük el az alapábránkat!</h3>
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<div class="org-src-container">
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<pre class="src src-R">termesAlap <span style="color: #7fffd4;"><-</span> plotMuso(variable=<span style="color: #ff1493;">"cum_yieldC_HRV"</span>)+
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labs(y=expression(paste(<span style="color: #ff1493;">"yield ["</span>,kg[C],m^-2,<span style="color: #ff1493;">"]"</span>)))
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</pre>
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</div>
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</section>
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<section id="slide-sec-3-14">
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<h3 id="orgd685c04"><span class="section-number-3">3.14</span> Mentsük le a LAI-t is</h3>
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<div class="org-src-container">
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<pre class="src src-R">LAIAlap <span style="color: #7fffd4;"><-</span> plotMuso(variable=<span style="color: #ff1493;">"proj_lai"</span>)+
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labs(y=expression(
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paste(<span style="color: #ff1493;">"Levélfelületi index "</span>,over(m^2,m^2))))
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LAIAlap
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</pre>
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</div>
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<div class="figure">
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<p><img src="hegyhatsal/lai_base.png" alt="lai_base.png" />
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</p>
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||||
</div>
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||||
</section>
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</section>
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||||
</div>
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||||
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||||
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@ -1 +0,0 @@
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Subproject commit 249f0139598b20d02263b81a76f1ff87f8e74225
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294
index.html
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index.html
@ -1,294 +0,0 @@
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<!DOCTYPE html>
|
||||
<html lang="hu">
|
||||
<head>
|
||||
<meta charset="utf-8"/>
|
||||
<title>Szimuláció RBBGCMuso-val</title>
|
||||
<meta name="author" content="(Hollós Roland)"/>
|
||||
<style type="text/css">
|
||||
.underline { text-decoration: underline; }
|
||||
</style>
|
||||
<link rel="stylesheet" href="./reveal.js/css/reveal.css"/>
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|
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<link rel="stylesheet" href="./reveal.js/css/theme/moon.css" id="theme"/>
|
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|
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|
||||
<!-- If the query includes 'print-pdf', include the PDF print sheet -->
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<script>
|
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if( window.location.search.match( /print-pdf/gi ) ) {
|
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|
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link.rel = 'stylesheet';
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link.type = 'text/css';
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link.href = './reveal.js/css/print/pdf.css';
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}
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</script>
|
||||
</head>
|
||||
<body>
|
||||
<div class="reveal">
|
||||
<div class="slides">
|
||||
<section id="sec-title-slide"><h1 class="title">Szimuláció RBBGCMuso-val</h1><h2 class="author">Hollós Roland</h2><h2 class="date">2018. 09. 27</h2>
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||||
</section>
|
||||
<section id="table-of-contents">
|
||||
<div id="table-of-contents">
|
||||
<h2>Tartalomjegyzék</h2>
|
||||
<div id="text-table-of-contents">
|
||||
<ul>
|
||||
<li><a href="#/slide-org3a18f38">1. Bevezetés</a></li>
|
||||
<li><a href="#/slide-org5386a01">2. Kérdésfeltevés</a></li>
|
||||
<li><a href="#/slide-org2f354e5">3. RBBGCMuso használata</a></li>
|
||||
</ul>
|
||||
</div>
|
||||
</div>
|
||||
</section>
|
||||
|
||||
<section>
|
||||
<section id="slide-sec-1">
|
||||
<h2 id="org3a18f38"><span class="section-number-2">1</span> Bevezetés</h2>
|
||||
</section>
|
||||
</section>
|
||||
<section>
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||||
<section id="slide-sec-2">
|
||||
<h2 id="org5386a01"><span class="section-number-2">2</span> Kérdésfeltevés</h2>
|
||||
</section>
|
||||
</section>
|
||||
<section>
|
||||
<section id="slide-sec-3">
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||||
<h2 id="org2f354e5"><span class="section-number-2">3</span> RBBGCMuso használata</h2>
|
||||
<div class="outline-text-2" id="text-3">
|
||||
</div>
|
||||
</section>
|
||||
<section id="slide-sec-3-1">
|
||||
<h3 id="org0fe0db7"><span class="section-number-3">3.1</span> devtools telepítése</h3>
|
||||
<div class="org-src-container">
|
||||
|
||||
<pre class="src src-R">install.packages(<span style="color: #ff1493;">"devtools"</span>)
|
||||
</pre>
|
||||
</div>
|
||||
|
||||
</section>
|
||||
<section id="slide-sec-3-2">
|
||||
<h3 id="org2b1e6f5"><span class="section-number-3">3.2</span> RBBGCMuso telepítése</h3>
|
||||
<div class="org-src-container">
|
||||
|
||||
<pre class="src src-R">devtools::install_github(<span style="color: #ff1493;">"hollorol/RBBGCMuso/RGBBCMuso"</span>)
|
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</pre>
|
||||
</div>
|
||||
</section>
|
||||
<section id="slide-sec-3-3">
|
||||
<h3 id="org0a30b93"><span class="section-number-3">3.3</span> csomagok betöltése, munkakönyvtár beállítása:</h3>
|
||||
<div class="org-src-container">
|
||||
|
||||
<pre class="src src-R"><span style="color: #7fffd4;">library</span>(RBBGCMuso)
|
||||
<span style="color: #7fffd4;">library</span>(ggplot2)
|
||||
</pre>
|
||||
</div>
|
||||
|
||||
</section>
|
||||
<section id="slide-sec-3-4">
|
||||
<h3 id="orgbdd1806"><span class="section-number-3">3.4</span> futtatás előkészítése: <i>setupMuso()</i></h3>
|
||||
<div class="org-src-container">
|
||||
|
||||
<pre class="src src-R">beallitasok <span style="color: #7fffd4;"><-</span> setupMuso()
|
||||
</pre>
|
||||
</div>
|
||||
|
||||
</section>
|
||||
<section id="slide-sec-3-5">
|
||||
<h3 id="org3fc27f2"><span class="section-number-3">3.5</span> modellfuttatás: <i>calibMuso()</i></h3>
|
||||
<div class="org-src-container">
|
||||
|
||||
<pre class="src src-R">kimenet <span style="color: #7fffd4;"><-</span> calibMuso(settings = beallitasok,skipSpinup=<span style="color: #8470ff;">FALSE</span>)
|
||||
kimenet[1:6,1:2]
|
||||
</pre>
|
||||
</div>
|
||||
|
||||
</section>
|
||||
<section id="slide-sec-3-6">
|
||||
<h3 id="org303dc53"><span class="section-number-3">3.6</span> kimeneti adatok ábrázolása (első verzió)</h3>
|
||||
<div class="org-src-container">
|
||||
|
||||
<pre class="src src-R">plot(kimenet[,<span style="color: #ff1493;">"daily_gpp"</span>])
|
||||
</pre>
|
||||
</div>
|
||||
|
||||
|
||||
<div class="figure">
|
||||
<p><img src="file:///home/hollorol/Documents/workshop/hegyhatsal/daily_1.png" alt="daily_1.png" />
|
||||
</p>
|
||||
</div>
|
||||
|
||||
</section>
|
||||
<section id="slide-sec-3-7">
|
||||
<h3 id="org4e23223"><span class="section-number-3">3.7</span> egy kicsit cicomázva:</h3>
|
||||
<div class="org-src-container">
|
||||
|
||||
<pre class="src src-R">par(mar=c(5,5,4,4))
|
||||
plot(y=kimenet[,<span style="color: #ff1493;">"daily_gpp"</span>],
|
||||
x=as.Date(rownames(kimenet),<span style="color: #ff1493;">"%d.%m.%Y"</span>), xlab=<span style="color: #ff1493;">"Days"</span>,
|
||||
ylab = expression(paste(<span style="color: #ff1493;">"daily GPP ["</span>,kg[C],m^-2,<span style="color: #ff1493;">"]"</span>)),
|
||||
type=<span style="color: #ff1493;">"l"</span>, col=<span style="color: #ff1493;">"blue"</span>, lwd=<span style="color: #ff1493;">"1.8"</span>)
|
||||
</pre>
|
||||
</div>
|
||||
|
||||
|
||||
<div class="figure">
|
||||
<p><img src="file:///home/hollorol/Documents/workshop/hegyhatsal/daily_2.png" alt="daily_2.png" />
|
||||
</p>
|
||||
</div>
|
||||
|
||||
</section>
|
||||
<section id="slide-sec-3-8">
|
||||
<h3 id="orgf5873fa"><span class="section-number-3">3.8</span> Mindez sokkal egyszerűbben</h3>
|
||||
<div class="org-src-container">
|
||||
|
||||
<pre class="src src-R">plotMuso(variable=<span style="color: #ff1493;">"daily_gpp"</span>)
|
||||
</pre>
|
||||
</div>
|
||||
|
||||
|
||||
<div class="figure">
|
||||
<p><img src="file:///home/hollorol/Documents/workshop/hegyhatsal/daily_3.png" alt="daily_3.png" />
|
||||
</p>
|
||||
</div>
|
||||
|
||||
</section>
|
||||
<section id="slide-sec-3-9">
|
||||
<h3 id="orga91d83f"><span class="section-number-3">3.9</span> Egy apró javítás</h3>
|
||||
<div class="org-src-container">
|
||||
|
||||
<pre class="src src-R">plotMuso(variable=<span style="color: #ff1493;">"daily_gpp"</span>)+
|
||||
labs(y=expression(paste(<span style="color: #ff1493;">"daily GPP ["</span>,kg[C],m^-2,<span style="color: #ff1493;">"]"</span>)))
|
||||
</pre>
|
||||
</div>
|
||||
|
||||
|
||||
<div class="figure">
|
||||
<p><img src="file:///home/hollorol/Documents/workshop/hegyhatsal/daily_4.png" alt="daily_4.png" />
|
||||
</p>
|
||||
</div>
|
||||
|
||||
</section>
|
||||
<section id="slide-sec-3-10">
|
||||
<h3 id="org4d08121"><span class="section-number-3">3.10</span> <i>musoMappingFind()</i></h3>
|
||||
<ul>
|
||||
<li class="fragment appear">Honnan tudjuk, hogy mi is egy általános változónak a neve?
|
||||
<ul>
|
||||
<li class="fragment appear"><a href="http://nimbus.elte.hu/bbgc/files/MUSO5b_variables.xlsx">http://nimbus.elte.hu/bbgc/files/MUSO5b_variables.xlsx</a></li>
|
||||
<li class="fragment appear"><i>musoMappingFind()</i> függvény segítségével pl.:</li>
|
||||
|
||||
</ul></li>
|
||||
|
||||
</ul>
|
||||
</section>
|
||||
<section id="slide-sec-3-11">
|
||||
<h3 id="org8c5a7d5"><span class="section-number-3">3.11</span> <i>musoMappingFind()</i></h3>
|
||||
<div class="org-src-container">
|
||||
|
||||
<pre class="src src-R">musoMappingFind(<span style="color: #ff1493;">"yield"</span>)
|
||||
</pre>
|
||||
</div>
|
||||
|
||||
<table border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
<col class="org-right" />
|
||||
|
||||
<col class="org-left" />
|
||||
</colgroup>
|
||||
<tbody>
|
||||
<tr>
|
||||
<td class="org-right">3037</td>
|
||||
<td class="org-left">cum_yieldC_HRV</td>
|
||||
</tr>
|
||||
</tbody>
|
||||
</table>
|
||||
|
||||
</section>
|
||||
<section id="slide-sec-3-12">
|
||||
<h3 id="orga0292d0"><span class="section-number-3">3.12</span> Nézzük meg, hogy hogyan változott a termés 2013 és 2017 között!</h3>
|
||||
<div class="org-src-container">
|
||||
|
||||
<pre class="src src-R">plotMuso(variable=<span style="color: #ff1493;">"cum_yieldC_HRV"</span>)+
|
||||
labs(y=expression(paste(<span style="color: #ff1493;">"yield ["</span>,kg[C],m^-2,<span style="color: #ff1493;">"]"</span>)))
|
||||
</pre>
|
||||
</div>
|
||||
|
||||
|
||||
<div class="figure">
|
||||
<p><img src="file:///home/hollorol/Documents/workshop/hegyhatsal/yield_base.png" alt="yield_base.png" />
|
||||
</p>
|
||||
</div>
|
||||
|
||||
|
||||
</section>
|
||||
<section id="slide-sec-3-13">
|
||||
<h3 id="org1d8ecbe"><span class="section-number-3">3.13</span> Mentsük el az alapábránkat!</h3>
|
||||
<div class="org-src-container">
|
||||
|
||||
<pre class="src src-R">termesAlap <span style="color: #7fffd4;"><-</span> plotMuso(variable=<span style="color: #ff1493;">"cum_yieldC_HRV"</span>)+
|
||||
labs(y=expression(paste(<span style="color: #ff1493;">"yield ["</span>,kg[C],m^-2,<span style="color: #ff1493;">"]"</span>)))
|
||||
</pre>
|
||||
</div>
|
||||
|
||||
|
||||
|
||||
|
||||
</section>
|
||||
<section id="slide-sec-3-14">
|
||||
<h3 id="orgd685c04"><span class="section-number-3">3.14</span> Mentsük le a LAI-t is</h3>
|
||||
<div class="org-src-container">
|
||||
|
||||
<pre class="src src-R">LAIAlap <span style="color: #7fffd4;"><-</span> plotMuso(variable=<span style="color: #ff1493;">"proj_lai"</span>)+
|
||||
labs(y=expression(
|
||||
paste(<span style="color: #ff1493;">"Levélfelületi index "</span>,over(m^2,m^2))))
|
||||
LAIAlap
|
||||
</pre>
|
||||
</div>
|
||||
|
||||
|
||||
<div class="figure">
|
||||
<p><img src="file:///home/hollorol/Documents/workshop/hegyhatsal/lai_base.png" alt="lai_base.png" />
|
||||
</p>
|
||||
</div>
|
||||
</section>
|
||||
</section>
|
||||
</div>
|
||||
</div>
|
||||
<script src="./reveal.js/lib/js/head.min.js"></script>
|
||||
<script src="./reveal.js/js/reveal.js"></script>
|
||||
|
||||
<script>
|
||||
// Full list of configuration options available here:
|
||||
// https://github.com/hakimel/reveal.js#configuration
|
||||
Reveal.initialize({
|
||||
|
||||
controls: true,
|
||||
progress: true,
|
||||
history: false,
|
||||
center: true,
|
||||
slideNumber: 'c',
|
||||
rollingLinks: false,
|
||||
keyboard: true,
|
||||
overview: true,
|
||||
|
||||
theme: Reveal.getQueryHash().theme, // available themes are in /css/theme
|
||||
transition: Reveal.getQueryHash().transition || 'default', // default/cube/page/concave/zoom/linear/fade/none
|
||||
transitionSpeed: 'default',
|
||||
multiplex: {
|
||||
secret: '', // null if client
|
||||
id: '', // id, obtained from socket.io server
|
||||
url: '' // Location of socket.io server
|
||||
},
|
||||
|
||||
// Optional libraries used to extend on reveal.js
|
||||
dependencies: [
|
||||
{ src: './reveal.js/lib/js/classList.js', condition: function() { return !document.body.classList; } },
|
||||
{ src: './reveal.js/plugin/markdown/marked.js', condition: function() { return !!document.querySelector( '[data-markdown]' ); } },
|
||||
{ src: './reveal.js/plugin/markdown/markdown.js', condition: function() { return !!document.querySelector( '[data-markdown]' ); } },
|
||||
{ src: './reveal.js/plugin/zoom-js/zoom.js', async: true, condition: function() { return !!document.body.classList; } },
|
||||
{ src: './reveal.js/plugin/notes/notes.js', async: true, condition: function() { return !!document.body.classList; } }]
|
||||
});
|
||||
</script>
|
||||
</body>
|
||||
</html>
|
||||
Loading…
Reference in New Issue
Block a user