hollorol/RBBGCMuso
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

update on examples

Browse Source
This commit is contained in:
Barcza Zoltán 2019-01-23 11:22:42 +01:00
parent a4608c668e
commit 9ba1c7a7a8
4 changed files with 94 additions and 110 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

84
RBBGCMuso/inst/examples/hhs/n.ini
View File

@ -1,7 +1,7 @@
BBGC_MuSo simulation (missing data: -9999) BBGC_MuSo simulation (missing data: -9999)
MET_INPUT MET_INPUT
hhs_2013-2016.mtc43 (filename) met file name hhs_2013-2016.mtc43 (filename) met file name
4 (int) number of header lines in met file 4 (int) number of header lines in met file
365 (int) number of simdays in last simyear (truncated year: < 365) 365 (int) number of simdays in last simyear (truncated year: < 365)
@ -9,12 +9,12 @@ RESTART
1 (flag) 1 = read restart; 0 = dont read restart 1 (flag) 1 = read restart; 0 = dont read restart
0 (flag) 1 = write restart; 0 = dont write restart 0 (flag) 1 = write restart; 0 = dont write restart
0 (flag) 1 = use restart metyear; 0 = reset metyear 0 (flag) 1 = use restart metyear; 0 = reset metyear
hhs.endpoint (filename) name of the input restart file hhs.endpoint (filename) name of the input restart file
hhs.endpoint (filename) name of the output restart file hhs.endpoint (filename) name of the output restart file
TIME_DEFINE TIME_DEFINE
4 (int) number of meteorological data years 4 (int) number of meteorological data years
4 (int) number of simulation years 4 (int) number of simulation years
2013 (int) first simulation year 2013 (int) first simulation year
0 (flag) 1 = spinup run; 0 = normal run 0 (flag) 1 = spinup run; 0 = normal run
6000 (int) maximum number of spinup years 6000 (int) maximum number of spinup years
@ -29,17 +29,17 @@ CLIM_CHANGE
CO2_CONTROL CO2_CONTROL
0 (flag) 0=constant; 1=vary with file 0 (flag) 0=constant; 1=vary with file
395.0 (ppm) constant atmospheric CO2 concentration 395.0 (ppm) constant atmospheric CO2 concentration
CO2_from2013.txt (filename) name of the CO2 file CO2_from2013.txt (filename) name of the CO2 file
NDEP_CONTROL NDEP_CONTROL
0 (flag) 0=constant; 1=vary with file 0 (flag) 0=constant; 1=vary with file
0.001400 (kgN/m2/yr) wet+dry atmospheric deposition of N 0.001400 (kgN/m2/yr) wet+dry atmospheric deposition of N
Ndep_from2013.txt (filename) name of the N-dep file Ndep_from2013.txt (filename) name of the N-dep file
SITE SITE
30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 (%) sand percentage by volume in rock-free soil 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 (%) sand percentage by volume in rock-free soil
50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 (%) silt percentage by volume in rock-free soil 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 (%) silt percentage by volume in rock-free soil
7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 (dimless) soil pH 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 (dimless) soil pH
248.0 (m) site elevation 248.0 (m) site elevation
46.95 (degrees) site latitude (- for S.Hem.) 46.95 (degrees) site latitude (- for S.Hem.)
0.20 (DIM) site shortwave albedo 0.20 (DIM) site shortwave albedo
@ -54,7 +54,7 @@ SITE
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at hygroscopic water content -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at hygroscopic water content
EPC_FILE EPC_FILE
maize.epc (filename) EPC file name maize.epc (filename) EPC file name
W_STATE W_STATE
0.0 (kg/m2) water stored in snowpack 0.0 (kg/m2) water stored in snowpack
@ -81,7 +81,7 @@ CN_STATE
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgN/m2) soil mineralized nitrogen, NO3 pool 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgN/m2) soil mineralized nitrogen, NO3 pool
OUTPUT_CONTROL OUTPUT_CONTROL
hegyhatsal (filename) output prefix hegyhatsal (filename) output prefix
1 (flag) writing daily output (0 = no; 1 = binary; 2 = ascii) 1 (flag) writing daily output (0 = no; 1 = binary; 2 = ascii)
0 (flag) writing monthly average of daily output (0 = no; 1 = binary; 2 = ascii) 0 (flag) writing monthly average of daily output (0 = no; 1 = binary; 2 = ascii)
0 (flag) writing annual average of daily output (0 = no; 1 = binary; 2 = ascii) 0 (flag) writing annual average of daily output (0 = no; 1 = binary; 2 = ascii)
@ -90,28 +90,28 @@ hegyhatsal
DAILY_OUTPUT DAILY_OUTPUT
39 number of daily output variables 39 number of daily output variables
49 0 tsoil[0] 49 1 tsoil[0]
171 1 evapotranspiration 171 2 evapotranspiration
159 2 soilw_evap 159 3 soilw_evap
397 3 litr1c_total 397 4 litr1c_total
398 4 litr2c_total 398 5 litr2c_total
399 5 litr3c_total 399 6 litr3c_total
400 6 litr4c_total 400 7 litr4c_total
518 7 soil1c_total 518 8 soil1c_total
519 8 soil2c_total 519 9 soil2c_total
520 9 soil3c_total 520 10 soil3c_total
521 10 soil4c_total 521 11 soil4c_total
313 11 fruitc 313 12 fruitc
552 13 HRV_transportC 552 13 HRV_transportC
2520 14 proj_lai 2520 14 proj_lai
3017 15 total litterfall aboveground 3017 15 total litterfall aboveground
3018 16 total litterfall belowground 3018 16 total litterfall belowground
2599 17 vwc[0] =soilw layer1 first layer 0-2 cm 2599 17 vwc[0] soilw layer1 first layer 0-2 cm
2600 18 vwc[1] the second 2-5 cm 2600 18 vwc[1] the second 2-5 cm
2601 19 vwc[2] the third is at 5-10 cm 2601 19 vwc[2] the third is at 5-10 cm
2602 20 vwc[3] the fourth is at 10-20 cm 2602 20 vwc[3] the fourth is at 10-20 cm
2603 21 vwc[4] the fifth is at 20-50 cm 2603 21 vwc[4] the fifth is at 20-50 cm
2604 22 vwc[5] the sixth is at 50-100 2604 22 vwc[5] the sixth is at 50-100
407 23 standing dead biomass 407 23 standing dead biomass
3006 24 daily_npp; 3006 24 daily_npp;
3005 25 daily_nep 3005 25 daily_nep
@ -121,12 +121,12 @@ DAILY_OUTPUT
3012 29 daily_hr 3012 29 daily_hr
3051 30 litrc 3051 30 litrc
3052 31 soilc 3052 31 soilc
3037 32 cum_yieldC_HRV (kgC/m2) 3037 32 cum_yieldC_HRV (kgC/m2)
74 33 GDD 74 33 GDD
1531 34 SUM of the soil mineral NH4 in the total soil [kgN/m2] 1531 34 SUM of the soil mineral NH4 in the total soil [kgN/m2]
1532 35 SUM of the soil mineral NO3 in the total soil [kgN/m2] 1532 35 SUM of the soil mineral NO3 in the total soil [kgN/m2]
3013 36 daily soil respiration 3013 36 daily soil respiration
307 37 leafC -----------------new 307 37 leafC
310 38 fine root C 310 38 fine root C
316 39 soft stem C 316 39 soft stem C
@ -149,13 +149,13 @@ ANNUAL_OUTPUT
MANAGEMENT_SECTION MANAGEMENT_SECTION
------------------- -------------------
PLANTING PLANTING
1 (flag) do PLANTING? 0=no; 1=yes; filepath=reading from file 1 (flag) do PLANTING? 0=no; 1=yes; filepath=reading from file
121 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) PLANTING day 121 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) PLANTING day
0.05 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) germination depth 0.05 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) germination depth
7 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(n/m2) number of seedlings 7 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(n/m2) number of seedlings
380 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(g/1000n) weight of 1000-seed 380 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(g/1000n) weight of 1000-seed
40 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) C content of seed 40 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) C content of seed
100 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) emergence rate 100 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) emergence rate
THINNING THINNING
0 (flag) do THINNING? 0=no; 1=yes; filepath=reading from file 0 (flag) do THINNING? 0=no; 1=yes; filepath=reading from file
@ -194,30 +194,30 @@ GRAZING
HARVESTING HARVESTING
1 (flag) do HARVESTING? 0=no; 1=yes; filepath=reading from file 1 (flag) do HARVESTING? 0=no; 1=yes; filepath=reading from file
275 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) HARVESTING day 275 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) HARVESTING day
0.03 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgC/m2) soft stem C content after HARVESTING 0.03 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgC/m2) soft stem C content after HARVESTING
90 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) transported part of plant material 90 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) transported part of plant material
PLOUGHING PLOUGHING
1 (flag) do PLOUGHING? 0=no; 1=yes; filepath=reading from file 1 (flag) do PLOUGHING? 0=no; 1=yes; filepath=reading from file
110 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) PLOUGHING day 110 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) PLOUGHING day
0.3 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) PLOUGHING depth 0.3 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) PLOUGHING depth
0.1 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(prop) dissolving coefficient of ploughed biome to litter 0.1 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(prop) dissolving coefficient of ploughed biome to litter
FERTILIZING FERTILIZING
1 (flag) do FERTILIZING? 0=no; 1=yes; filepath=reading from file 1 (flag) do FERTILIZING? 0=no; 1=yes; filepath=reading from file
90 140 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) FERTILIZING day 90 140 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) FERTILIZING day
0.28 0.28 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) fertilizing depth 0.28 0.28 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) fertilizing depth
120. 30. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN fertilizer/ha/day) amount of fertilizer 120. 30. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN fertilizer/ha/day) amount of fertilizer
100 100 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) dry matter content of fertilizer 100 100 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) dry matter content of fertilizer
0.5 0.5 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) nitrate content of fertilizer 0.5 0.5 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) nitrate content of fertilizer
0.5 0.5 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) ammonium content of fertilizer 0.5 0.5 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) ammonium content of fertilizer
0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) organic nitrogen content of fertilizer 0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) organic nitrogen content of fertilizer
0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgC/kg fertilizer) organic carbon content of fertilizer 0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgC/kg fertilizer) organic carbon content of fertilizer
0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) labile fraction of fertilizer 0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) labile fraction of fertilizer
0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) unshielded cellulose fraction of fertilizer 0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) unshielded cellulose fraction of fertilizer
0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) shielded cellulose fraction of fertilizer 0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) shielded cellulose fraction of fertilizer
0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) lignin fraction of fertilizer 0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) lignin fraction of fertilizer
0.01 0.01 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN2O-N:kgN) emission factor for N-additions 0.01 0.01 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN2O-N:kgN) emission factor for N-additions
IRRIGATION IRRIGATION

86
RBBGCMuso/inst/examples/hhs/normal_gyep.ini → RBBGCMuso/inst/examples/hhs/normal_grass.ini
View File

@ -1,7 +1,7 @@
BBGC_MuSo simulation (missing data: -9999) BBGC_MuSo simulation (missing data: -9999)
MET_INPUT MET_INPUT
hhs_2013-2016.mtc43 (filename) met file name hhs_2013-2016.mtc43 (filename) met file name
4 (int) number of header lines in met file 4 (int) number of header lines in met file
365 (int) number of simdays in last simyear (truncated year: < 365) 365 (int) number of simdays in last simyear (truncated year: < 365)
@ -9,12 +9,12 @@ RESTART
1 (flag) 1 = read restart; 0 = dont read restart 1 (flag) 1 = read restart; 0 = dont read restart
0 (flag) 1 = write restart; 0 = dont write restart 0 (flag) 1 = write restart; 0 = dont write restart
0 (flag) 1 = use restart metyear; 0 = reset metyear 0 (flag) 1 = use restart metyear; 0 = reset metyear
hhs.endpoint (filename) name of the input restart file hhs.endpoint (filename) name of the input restart file
hhs.endpoint (filename) name of the output restart file hhs.endpoint (filename) name of the output restart file
TIME_DEFINE TIME_DEFINE
4 (int) number of meteorological data years 4 (int) number of meteorological data years
4 (int) number of simulation years 4 (int) number of simulation years
2013 (int) first simulation year 2013 (int) first simulation year
0 (flag) 1 = spinup run; 0 = normal run 0 (flag) 1 = spinup run; 0 = normal run
6000 (int) maximum number of spinup years 6000 (int) maximum number of spinup years
@ -29,17 +29,17 @@ CLIM_CHANGE
CO2_CONTROL CO2_CONTROL
0 (flag) 0=constant; 1=vary with file 0 (flag) 0=constant; 1=vary with file
395.0 (ppm) constant atmospheric CO2 concentration 395.0 (ppm) constant atmospheric CO2 concentration
CO2_from2013.txt (filename) name of the CO2 file CO2_from2013.txt (filename) name of the CO2 file
NDEP_CONTROL NDEP_CONTROL
0 (flag) 0=constant; 1=vary with file 0 (flag) 0=constant; 1=vary with file
0.001400 (kgN/m2/yr) wet+dry atmospheric deposition of N 0.001400 (kgN/m2/yr) wet+dry atmospheric deposition of N
Ndep_from2013.txt (filename) name of the N-dep file Ndep_from2013.txt (filename) name of the N-dep file
SITE SITE
30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 (%) sand percentage by volume in rock-free soil 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 (%) sand percentage by volume in rock-free soil
50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 (%) silt percentage by volume in rock-free soil 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 (%) silt percentage by volume in rock-free soil
7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 (dimless) soil pH 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 (dimless) soil pH
248.0 (m) site elevation 248.0 (m) site elevation
46.95 (degrees) site latitude (- for S.Hem.) 46.95 (degrees) site latitude (- for S.Hem.)
0.20 (DIM) site shortwave albedo 0.20 (DIM) site shortwave albedo
@ -54,7 +54,7 @@ SITE
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at hygroscopic water content -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at hygroscopic water content
EPC_FILE EPC_FILE
maize.epc (filename) EPC file name maize.epc (filename) EPC file name
W_STATE W_STATE
0.0 (kg/m2) water stored in snowpack 0.0 (kg/m2) water stored in snowpack
@ -81,7 +81,7 @@ CN_STATE
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgN/m2) soil mineralized nitrogen, NO3 pool 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgN/m2) soil mineralized nitrogen, NO3 pool
OUTPUT_CONTROL OUTPUT_CONTROL
hegyhatsal (filename) output prefix hegyhatsal (filename) output prefix
1 (flag) writing daily output (0 = no; 1 = binary; 2 = ascii) 1 (flag) writing daily output (0 = no; 1 = binary; 2 = ascii)
0 (flag) writing monthly average of daily output (0 = no; 1 = binary; 2 = ascii) 0 (flag) writing monthly average of daily output (0 = no; 1 = binary; 2 = ascii)
0 (flag) writing annual average of daily output (0 = no; 1 = binary; 2 = ascii) 0 (flag) writing annual average of daily output (0 = no; 1 = binary; 2 = ascii)
@ -90,30 +90,30 @@ hegyhatsal
DAILY_OUTPUT DAILY_OUTPUT
39 number of daily output variables 39 number of daily output variables
49 0 tsoil[0] 49 1 tsoil[0]
171 1 evapotranspiration 171 2 evapotranspiration
159 2 soilw_evap 159 3 soilw_evap
397 3 litr1c_total 397 4 litr1c_total
398 4 litr2c_total 398 5 litr2c_total
399 5 litr3c_total 399 6 litr3c_total
400 6 litr4c_total 400 7 litr4c_total
518 7 soil1c_total 518 8 soil1c_total
519 8 soil2c_total 519 9 soil2c_total
520 9 soil3c_total 520 10 soil3c_total
521 10 soil4c_total 521 11 soil4c_total
313 11 fruitc 313 12 fruitc
552 13 HRV_transportC 552 13 HRV_transportC
2520 14 proj_lai 2520 14 proj_lai
3017 15 total litterfall aboveground 3017 15 total litterfall aboveground
3018 16 total litterfall belowground 3018 16 total litterfall belowground
2599 17 vwc[0] =soilw layer1 first layer 0-2 cm 2599 17 vwc[0] soilw layer1 first layer 0-2 cm
2600 18 vwc[1] the second 2-5 cm 2600 18 vwc[1] the second 2-5 cm
2601 19 vwc[2] the third is at 5-10 cm 2601 19 vwc[2] the third is at 5-10 cm
2602 20 vwc[3] the fourth is at 10-20 cm 2602 20 vwc[3] the fourth is at 10-20 cm
2603 21 vwc[4] the fifth is at 20-50 cm 2603 21 vwc[4] the fifth is at 20-50 cm
2604 22 vwc[5] the sixth is at 50-100 2604 22 vwc[5] the sixth is at 50-100
407 23 standing dead biomass 407 23 standing dead biomass
3006 24 daily_npp; 3006 24 daily_npp
3005 25 daily_nep 3005 25 daily_nep
3009 26 daily_gpp 3009 26 daily_gpp
3010 27 daily_mr 3010 27 daily_mr
@ -121,12 +121,12 @@ DAILY_OUTPUT
3012 29 daily_hr 3012 29 daily_hr
3051 30 litrc 3051 30 litrc
3052 31 soilc 3052 31 soilc
3037 32 cum_yieldC_HRV (kgC/m2) 3037 32 cum_yieldC_HRV
74 33 GDD 74 33 GDD
1531 34 SUM of the soil mineral NH4 in the total soil [kgN/m2] 1531 34 SUM of the soil mineral NH4 in the total soil [kgN/m2]
1532 35 SUM of the soil mineral NO3 in the total soil [kgN/m2] 1532 35 SUM of the soil mineral NO3 in the total soil [kgN/m2]
3013 36 daily soil respiration 3013 36 daily soil respiration
307 37 leafC -----------------new 307 37 leafC
310 38 fine root C 310 38 fine root C
316 39 soft stem C 316 39 soft stem C
@ -149,13 +149,13 @@ ANNUAL_OUTPUT
MANAGEMENT_SECTION MANAGEMENT_SECTION
------------------- -------------------
PLANTING PLANTING
1 (flag) do PLANTING? 0=no; 1=yes; filepath=reading from file 1 (flag) do PLANTING? 0=no; 1=yes; filepath=reading from file
121 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) PLANTING day 121 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) PLANTING day
0.05 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) germination depth 0.05 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) germination depth
7 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(n/m2) number of seedlings 7 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(n/m2) number of seedlings
380 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(g/1000n) weight of 1000-seed 380 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(g/1000n) weight of 1000-seed
40 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) C content of seed 40 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) C content of seed
100 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) emergence rate 100 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) emergence rate
THINNING THINNING
0 (flag) do THINNING? 0=no; 1=yes; filepath=reading from file 0 (flag) do THINNING? 0=no; 1=yes; filepath=reading from file
@ -194,30 +194,30 @@ GRAZING
HARVESTING HARVESTING
0 (flag) do HARVESTING? 0=no; 1=yes; filepath=reading from file 0 (flag) do HARVESTING? 0=no; 1=yes; filepath=reading from file
275 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) HARVESTING day 275 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) HARVESTING day
0.03 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgC/m2) soft stem C content after HARVESTING 0.03 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgC/m2) soft stem C content after HARVESTING
90 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) transported part of plant material 90 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) transported part of plant material
PLOUGHING PLOUGHING
0 (flag) do PLOUGHING? 0=no; 1=yes; filepath=reading from file 0 (flag) do PLOUGHING? 0=no; 1=yes; filepath=reading from file
110 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) PLOUGHING day 110 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) PLOUGHING day
0.3 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) PLOUGHING depth 0.3 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) PLOUGHING depth
0.1 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(prop) dissolving coefficient of ploughed biome to litter 0.1 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(prop) dissolving coefficient of ploughed biome to litter
FERTILIZING FERTILIZING
0 (flag) do FERTILIZING? 0=no; 1=yes; filepath=reading from file 0 (flag) do FERTILIZING? 0=no; 1=yes; filepath=reading from file
90 140 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) FERTILIZING day 90 140 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(yday) FERTILIZING day
0.28 0.28 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) fertilizing depth 0.28 0.28 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(m) fertilizing depth
120. 30. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN fertilizer/ha/day) amount of fertilizer 120. 30. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN fertilizer/ha/day) amount of fertilizer
100 100 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) dry matter content of fertilizer 100 100 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) dry matter content of fertilizer
0.5 0.5 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) nitrate content of fertilizer 0.5 0.5 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) nitrate content of fertilizer
0.5 0.5 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) ammonium content of fertilizer 0.5 0.5 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) ammonium content of fertilizer
0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) organic nitrogen content of fertilizer 0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN/kg fertilizer) organic nitrogen content of fertilizer
0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgC/kg fertilizer) organic carbon content of fertilizer 0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgC/kg fertilizer) organic carbon content of fertilizer
0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) labile fraction of fertilizer 0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) labile fraction of fertilizer
0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) unshielded cellulose fraction of fertilizer 0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) unshielded cellulose fraction of fertilizer
0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) shielded cellulose fraction of fertilizer 0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) shielded cellulose fraction of fertilizer
0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) lignin fraction of fertilizer 0. 0. -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(%) lignin fraction of fertilizer
0.01 0.01 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN2O-N:kgN) emission factor for N-additions 0.01 0.01 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 *(kgN2O-N:kgN) emission factor for N-additions
IRRIGATION IRRIGATION

18
RBBGCMuso/inst/examples/hhs/s.ini
View File

@ -1,7 +1,7 @@
BBGC_MuSo simulation (missing data: -9999) BBGC_MuSo simulation (missing data: -9999)
MET_INPUT MET_INPUT
hhs_1961-2014.mtc43 (filename) met file name hhs_1961-2014.mtc43 (filename) met file name
4 (int) number of header lines in met file 4 (int) number of header lines in met file
365 (int) number of simdays in last simyear (truncated year: < 365) 365 (int) number of simdays in last simyear (truncated year: < 365)
@ -9,12 +9,12 @@ RESTART
0 (flag) 1 = read restart; 0 = dont read restart 0 (flag) 1 = read restart; 0 = dont read restart
1 (flag) 1 = write restart; 0 = dont write restart 1 (flag) 1 = write restart; 0 = dont write restart
0 (flag) 1 = use restart metyear; 0 = reset metyear 0 (flag) 1 = use restart metyear; 0 = reset metyear
hhs.endpoint (filename) name of the input restart file hhs.endpoint (filename) name of the input restart file
hhs.endpoint (filename) name of the output restart file hhs.endpoint (filename) name of the output restart file
TIME_DEFINE TIME_DEFINE
54 (int) number of meteorological data years 54 (int) number of meteorological data years
54 (int) number of simulation years 54 (int) number of simulation years
1961 (int) first simulation year 1961 (int) first simulation year
1 (flag) 1 = spinup run; 0 = normal run 1 (flag) 1 = spinup run; 0 = normal run
6000 (int) maximum number of spinup years 6000 (int) maximum number of spinup years
@ -29,17 +29,17 @@ CLIM_CHANGE
CO2_CONTROL CO2_CONTROL
0 (flag) 0=constant; 1=vary with file 0 (flag) 0=constant; 1=vary with file
290.0 (ppm) constant atmospheric CO2 concentration 290.0 (ppm) constant atmospheric CO2 concentration
CO2_from1961.txt (filename) name of the CO2 file CO2_from1961.txt (filename) name of the CO2 file
NDEP_CONTROL NDEP_CONTROL
0 (flag) 0=constant; 1=vary with file 0 (flag) 0=constant; 1=vary with file
0.000200 (kgN/m2/yr) wet+dry atmospheric deposition of N 0.000200 (kgN/m2/yr) wet+dry atmospheric deposition of N
Ndep_from1961.txt (filename) name of the N-dep file Ndep_from1961.txt (filename) name of the N-dep file
SITE SITE
30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 (%) sand percentage by volume in rock-free soil 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0 (%) sand percentage by volume in rock-free soil
50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 (%) silt percentage by volume in rock-free soil 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0 (%) silt percentage by volume in rock-free soil
7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 (dimless) soil pH 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 (dimless) soil pH
248.0 (m) site elevation 248.0 (m) site elevation
46.95 (degrees) site latitude (- for S.Hem.) 46.95 (degrees) site latitude (- for S.Hem.)
0.20 (DIM) site shortwave albedo 0.20 (DIM) site shortwave albedo
@ -54,7 +54,7 @@ SITE
-9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at hygroscopic water content -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 (m3/m3) SWC at hygroscopic water content
EPC_FILE EPC_FILE
c3grass.epc (filename) EPC file name c3grass.epc (filename) EPC file name
W_STATE W_STATE
0.0 (kg/m2) water stored in snowpack 0.0 (kg/m2) water stored in snowpack
@ -81,7 +81,7 @@ CN_STATE
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgN/m2) soil mineralized nitrogen, NO3 pool 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 (kgN/m2) soil mineralized nitrogen, NO3 pool
OUTPUT_CONTROL OUTPUT_CONTROL
spinup_ (filename) output prefix spinup_ (filename) output prefix
0 (flag) writing daily output (0 = no; 1 = binary; 2 = ascii) 0 (flag) writing daily output (0 = no; 1 = binary; 2 = ascii)
0 (flag) writing monthly average of daily output (0 = no; 1 = binary; 2 = ascii) 0 (flag) writing monthly average of daily output (0 = no; 1 = binary; 2 = ascii)
0 (flag) writing annual average of daily output (0 = no; 1 = binary; 2 = ascii) 0 (flag) writing annual average of daily output (0 = no; 1 = binary; 2 = ascii)

16
RBBGCMuso/inst/examples/hhs/sensitivity.csv
View File

@ -1,16 +0,0 @@
"","x"
"BASETEMP",1.33
"WPM",0.18
"CN_lv",0.67
"CN_li",5.72
"CN_root",0.34
"CN_fruit",0.13
"CN_stem",0.59
"CLEC",4.67
"FLNR",26.17
"STOMA",0.79
"ROOTDEPTH",18.98
"SWCGERMIN",0.01
"MAXLIFETIME",0.09
"NH4MOBILEPROP",0.33
"keles",39.99
1 x
2 BASETEMP 1.33
3 WPM 0.18
4 CN_lv 0.67
5 CN_li 5.72
6 CN_root 0.34
7 CN_fruit 0.13
8 CN_stem 0.59
9 CLEC 4.67
10 FLNR 26.17
11 STOMA 0.79
12 ROOTDEPTH 18.98
13 SWCGERMIN 0.01
14 MAXLIFETIME 0.09
15 NH4MOBILEPROP 0.33
16 keles 39.99