delete test.R file
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Roland Hollós
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test.R
382
test.R
@ -1,382 +0,0 @@
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parameters <-
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getOption("RMuso_constMatrix")[["epc"]][["6"]]
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NAME
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yearday to start new growth
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yearday to end new growth
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transfer growth period as fraction of growing season
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litterfall as fraction of growing season
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base temperature
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minimum temperature for growth displayed on current day
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optimal1 temperature for growth displayed on current day
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optimal2 temperature for growth displayed on current day
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maxmimum temperature for growth displayed on current day
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minimum temperature for carbon assimilation displayed on current day
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optimal1 temperature for carbon assimilation displayed on current day
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optimal2 temperature for carbon assimilation displayed on current day
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maxmimum temperature for carbon assimilation displayed on current day
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annual leaf and fine root turnover fraction
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annual live wood turnover fraction
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annual fire mortality fraction
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whole-plant mortality paramter for vegetation period
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C:N of leaves
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C:N of leaf litter
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C:N of fine roots
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C:N of fruit
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C:N of softstem
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C:N of live wood
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C:N of dead wood
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dry matter content of leaves
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dry matter content of leaf litter
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dry matter content of fine roots
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dry matter content of fruit
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dry matter content of softstem
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dry matter content of live wood
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dry matter content of dead wood
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leaf litter labile proportion
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leaf litter cellulose proportion
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fine root labile proportion
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fine root cellulose proportion
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fruit labile proportion
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fruit cellulose proportion
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softstem labile proportion
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softstem cellulose proportion
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dead wood cellulose proportion
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canopy water interception coefficient
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canopy light extinction coefficient
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potential radiation use efficiency
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radiation parameter1 (Jiang et al.2015)
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radiation parameter1 (Jiang et al.2015)
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all-sided to projected leaf area ratio
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ratio of shaded SLA:sunlit SLA
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fraction of leaf N in Rubisco
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fraction of leaf N in PeP
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maximum stomatal conductance
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cuticular conductance
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boundary layer conductance
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maximum height of plant
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stem weight corresponding to maximum height
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plant height function shape parameter (slope)
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maximum depth of rooting zone
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root distribution parameter
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root weight corresponding to max root depth
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root depth function shape parameter (slope)
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root weight to rooth length conversion factor
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growth resp per unit of C grown
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maintenance respiration in kgC/day per kg of tissue N
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theoretical maximum prop. of non-structural and structural carbohydrates
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prop. of non-structural carbohydrates available for maintanance resp
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symbiotic+asymbiotic fixation of N
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time delay for temperature in photosynthesis acclimation
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critical VWCratio (prop. to FC-WP) in germination
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critical photoslow daylength
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slope of relative photoslow development rate
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critical vernalization temperature 1
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critical vernalization temperature 2
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critical vernalization temperature 3
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critical vernalization temperature 4
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slope of relative vernalization development rate
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required vernalization days (in vernalization development rate)
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critical flowering heat stress temperature 1
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critical flowering heat stress temperature 2
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theoretical maximum of flowering thermal stress mortality
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VWC ratio to calc. soil moisture limit 1 (prop. to FC-WP)
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VWC ratio to calc. soil moisture limit 2 (prop. to SAT-FC)
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minimum of soil moisture limit2 multiplicator (full anoxic stress value)
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vapor pressure deficit: start of conductance reduction
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vapor pressure deficit: complete conductance reduction
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maximum senescence mortality coefficient of aboveground plant material
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maximum senescence mortality coefficient of belowground plant material
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maximum senescence mortality coefficient of non-structured plant material
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lower limit extreme high temperature effect on senescence mortality
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upper limit extreme high temperature effect on senescence mortality
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turnover rate of wilted standing biomass to litter
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turnover rate of cut-down non-woody biomass to litter
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turnover rate of cut-down woody biomass to litter
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drought tolerance parameter (critical value of day since water stress)
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effect of soilstress factor on photosynthesis
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crit. amount of snow limiting photosyn.
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limit1 (under:full constrained) of HEATSUM index
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limit2 (above:unconstrained) of HEATSUM index
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limit1 (under:full constrained) of TMIN index
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limit2 (above:unconstrained) of TMIN index
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limit1 (above:full constrained) of VPD index
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limit2 (under:unconstrained) of VPD index
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limit1 (under:full constrained) of DAYLENGTH index
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limit2 (above:unconstrained) of DAYLENGTH index
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moving average (to avoid the effects of extreme events)
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GSI limit1 (greater that limit -> start of vegper)
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GSI limit2 (less that limit -> end of vegper)
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length of phenophase (GDD)-0
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leaf ALLOCATION -0
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fine root ALLOCATION-0
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fruit ALLOCATION -0
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soft stem ALLOCATION-0
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live woody stem ALLOCATION -0
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dead woody stem ALLOCATION -0
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live coarse root ALLOCATION-0
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dead coarse root ALLOCATION -0
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canopy average specific leaf area-0
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current growth proportion-0
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maximal lifetime of plant tissue-0
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length of phenophase (GDD)-1
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leaf ALLOCATION -1
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fine root ALLOCATION-1
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fruit ALLOCATION -1
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soft stem ALLOCATION-1
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live woody stem ALLOCATION -1
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dead woody stem ALLOCATION -1
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live coarse root ALLOCATION-1
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dead coarse root ALLOCATION -1
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canopy average specific leaf area-1
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current growth proportion-1
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maximal lifetime of plant tissue-1
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length of phenophase (GDD)-2
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leaf ALLOCATION -2
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fine root ALLOCATION-2
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fruit ALLOCATION -2
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soft stem ALLOCATION-2
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live woody stem ALLOCATION -2
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dead woody stem ALLOCATION -2
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live coarse root ALLOCATION-2
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dead coarse root ALLOCATION -2
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canopy average specific leaf area-2
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current growth proportion-2
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maximal lifetime of plant tissue-2
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length of phenophase (GDD)-3
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leaf ALLOCATION -3
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fine root ALLOCATION-3
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fruit ALLOCATION -3
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soft stem ALLOCATION-3
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live woody stem ALLOCATION -3
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dead woody stem ALLOCATION -3
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live coarse root ALLOCATION-3
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dead coarse root ALLOCATION -3
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canopy average specific leaf area-3
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current growth proportion-3
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maximal lifetime of plant tissue-3
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length of phenophase (GDD)-4
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leaf ALLOCATION -4
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fine root ALLOCATION-4
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fruit ALLOCATION -4
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soft stem ALLOCATION-4
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live woody stem ALLOCATION -4
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dead woody stem ALLOCATION -4
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live coarse root ALLOCATION-4
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dead coarse root ALLOCATION -4
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canopy average specific leaf area-4
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current growth proportion-4
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maximal lifetime of plant tissue-4
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length of phenophase (GDD)-5
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leaf ALLOCATION -5
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fine root ALLOCATION-5
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fruit ALLOCATION -5
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soft stem ALLOCATION-5
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live woody stem ALLOCATION -5
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dead woody stem ALLOCATION -5
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live coarse root ALLOCATION-5
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dead coarse root ALLOCATION -5
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canopy average specific leaf area-5
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current growth proportion-5
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maximal lifetime of plant tissue-5
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length of phenophase (GDD)-6
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leaf ALLOCATION -6
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fine root ALLOCATION-6
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fruit ALLOCATION -6
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soft stem ALLOCATION-6
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live woody stem ALLOCATION -6
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dead woody stem ALLOCATION -6
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live coarse root ALLOCATION-6
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dead coarse root ALLOCATION -6
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canopy average specific leaf area-6
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current growth proportion-6
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maximal lifetime of plant tissue-6
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INDEX UNIT DEPENDENCE MIN MAX GROUP TYPE
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9.00 yday NA 0.00000 364.0000 0 0
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10.00 yday NA 0.00000 364.0000 0 0
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11.00 prop NA 0.00000 1.0000 0 0
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12.00 prop NA 0.00000 1.0000 0 0
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13.00 Celsius NA 0.00000 12.0000 0 0
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14.00 Celsius 0 0.00000 10.0000 1 1
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15.00 Celsius 1 10.00000 20.0000 1 1
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16.00 Celsius 2 20.00000 40.0000 1 1
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17.00 Celsius 3 30.00000 50.0000 1 1
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18.00 Celsius 0 0.00000 10.0000 2 1
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19.00 Celsius 1 10.00000 20.0000 2 1
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20.00 Celsius 2 20.00000 40.0000 2 1
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21.00 Celsius 3 30.00000 50.0000 2 1
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22.00 1/yr NA 0.10000 0.4000 0 0
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23.00 1/yr NA 0.50000 1.0000 0 0
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24.00 1/yr NA 0.00000 1.0000 0 0
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25.00 1/vegper NA 0.00000 0.5000 0 0
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26.00 kgC/kgN 0 10.00000 100.0000 3 1
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27.00 kgC/kgN 1 10.00000 60.0000 3 1
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28.00 kgC/kgN 1 10.00000 60.0000 3 1
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29.00 kgC/kgN 1 10.00000 60.0000 3 1
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30.00 kgC/kgN 1 10.00000 60.0000 3 1
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31.00 kgC/kgN 0 50.00000 100.0000 4 1
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32.00 kgC/kgN 1 300.00000 800.0000 4 1
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33.00 kgC/kgDM NA 0.20000 0.6000 0 0
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34.00 kgC/kgDM NA 0.20000 0.6000 0 0
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35.00 kgC/kgDM NA 0.20000 0.6000 0 0
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36.00 kgC/kgDM NA 0.20000 0.6000 0 0
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37.00 kgC/kgDM NA 0.20000 0.6000 0 0
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38.00 kgC/kgDM NA 0.20000 0.6000 0 0
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39.00 kgC/kgDM NA 0.20000 0.6000 0 0
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40.00 prop 1 0.10000 0.6000 5 2
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41.00 prop 1 0.10000 0.6000 5 2
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42.00 prop 1 0.10000 0.6000 6 2
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43.00 prop 1 0.10000 0.6000 6 2
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44.00 prop 1 0.10000 0.6000 7 2
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45.00 prop 1 0.10000 0.6000 7 2
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46.00 prop 1 0.10000 0.6000 8 2
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47.00 prop 1 0.10000 0.6000 8 2
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48.00 prop NA 0.50000 0.9000 0 0
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49.00 1/LAI/d NA 0.01000 0.1000 0 0
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50.00 dimless NA 0.20000 0.8000 0 0
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51.00 g/MJ NA 2.00000 2.0000 0 0
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52.00 dimless NA 0.78100 0.7810 0 0
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53.00 dimless NA -13.59600 -13.5960 0 0
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54.00 dimless NA 2.00000 2.0000 0 0
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55.00 dimless NA 2.00000 2.0000 0 0
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56.00 dimless NA 0.01000 0.2000 0 0
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57.00 dimless NA 0.04240 0.0424 0 0
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58.00 m/s NA 0.00100 0.1000 0 0
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59.00 m/s NA 0.00001 0.0001 0 0
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60.00 m/s NA 0.01000 0.0900 0 0
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61.00 m NA 0.10000 10.0000 0 0
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62.00 kgC NA 0.10000 100.0000 0 0
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63.00 dimless NA 0.50000 0.5000 0 0
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64.00 m NA 0.10000 10.0000 0 0
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65.00 prop NA 3.67000 3.6700 0 0
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66.00 kgC/m2 NA 0.40000 0.4000 0 0
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67.00 prop NA 0.50000 0.5000 0 0
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68.00 m/kg NA 1000.00000 1000.0000 0 0
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69.00 prop NA 0.10000 0.5000 0 0
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70.00 kgC/kgN/d NA 0.10000 0.5000 0 0
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71.00 dimless NA 0.00000 1.0000 0 0
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72.00 dimless NA 0.00000 1.0000 0 0
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73.00 kgN/m2/yr NA 0.00000 0.0010 0 0
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74.00 day NA 0.00000 50.0000 0 0
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79.00 prop NA 0.00000 1.0000 0 0
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81.00 hour NA 14.00000 18.0000 0 0
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82.00 dimless NA 0.00500 0.0050 0 0
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84.00 Celsius 0 -5.00000 5.0000 9 1
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85.00 Celsius 1 0.00000 10.0000 9 1
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86.00 Celsius 2 5.00000 15.0000 9 1
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87.00 Celsius 3 10.00000 20.0000 9 1
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88.00 dimless NA 0.04000 0.0400 0 0
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89.00 dimless NA 30.00000 70.0000 0 0
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91.00 Celsius 0 30.00000 40.0000 10 1
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92.00 Celsius 1 30.00000 50.0000 10 1
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93.00 prop NA 0.00000 0.4000 0 0
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96.00 prop NA 0.50000 1.0000 0 0
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97.00 prop NA 0.50000 1.0000 0 0
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98.00 prop NA 0.00000 1.0000 0 0
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99.00 Pa NA 500.00000 1500.0000 0 0
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100.00 Pa NA 1500.00000 3500.0000 0 0
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101.00 prop 0 0.00000 0.1000 0 0
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102.00 prop 1 0.00000 0.1000 0 0
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103.00 prop NA 0.00000 0.1000 0 0
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104.00 Celsius NA 30.00000 40.0000 0 0
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105.00 Celsius NA 30.00000 50.0000 0 0
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106.00 prop NA 0.00000 0.1000 0 0
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107.00 prop NA 0.00000 0.1000 0 0
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108.00 prop NA 0.00000 0.1000 0 0
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109.00 n_day NA 0.00000 100.0000 0 0
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110.00 dimless NA 0.00000 1.0000 0 0
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113.00 kg/m2 NA 0.00000 20.0000 0 0
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114.00 Celsius 0 0.00000 50.0000 11 1
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115.00 Celsius 1 0.00000 100.0000 11 1
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116.00 Celsius 0 -5.00000 5.0000 12 1
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117.00 Celsius 1 0.00000 10.0000 12 1
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118.00 Pa 0 2000.00000 600.0000 13 1
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119.00 Pa 1 500.00000 1500.0000 13 1
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120.00 s 0 0.00000 0.0000 14 1
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121.00 s 1 0.00000 0.0000 14 1
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122.00 n_day NA 2.00000 20.0000 0 0
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123.00 dimless NA 0.00000 0.2000 0 0
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124.00 dimless NA 0.00000 0.1000 0 0
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128.60 Celsius NA 0.00000 10000.0000 0 0
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129.60 prop 1 0.00000 1.0000 15 -3
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130.60 prop 1 0.00000 1.0000 15 -3
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131.60 prop 1 0.00000 1.0000 15 -3
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132.60 prop 1 0.00000 1.0000 15 -3
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133.60 prop 1 0.00000 1.0000 15 -3
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134.60 prop 1 0.00000 1.0000 15 -3
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135.60 prop 1 0.00000 1.0000 15 -3
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136.60 prop 1 0.00000 1.0000 15 -3
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137.60 m2/kg NA 0.00000 2.0000 0 0
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138.60 prop NA 0.00000 0.0000 0 0
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139.60 Celsius NA 1.00000 20000.0000 0 0
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128.61 Celsius NA 0.00000 10000.0000 0 0
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129.61 prop 1 0.00000 1.0000 16 -3
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130.61 prop 1 0.00000 1.0000 16 -3
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131.61 prop 1 0.00000 1.0000 16 -3
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132.61 prop 1 0.00000 1.0000 16 -3
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133.61 prop 1 0.00000 1.0000 16 -3
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134.61 prop 1 0.00000 1.0000 16 -3
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135.61 prop 1 0.00000 1.0000 16 -3
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136.61 prop 1 0.00000 1.0000 16 -3
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137.61 m2/kg NA 0.00000 2.0000 0 0
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138.61 prop NA 0.00000 0.0000 0 0
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139.61 Celsius NA 1.00000 20000.0000 0 0
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128.62 Celsius NA 0.00000 10000.0000 0 0
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129.62 prop 1 0.00000 1.0000 17 -3
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130.62 prop 1 0.00000 1.0000 17 -3
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131.62 prop 1 0.00000 1.0000 17 -3
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132.62 prop 1 0.00000 1.0000 17 -3
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133.62 prop 1 0.00000 1.0000 17 -3
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134.62 prop 1 0.00000 1.0000 17 -3
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135.62 prop 1 0.00000 1.0000 17 -3
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136.62 prop 1 0.00000 1.0000 17 -3
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137.62 m2/kg NA 0.00000 2.0000 0 0
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138.62 prop NA 0.00000 0.0000 0 0
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139.62 Celsius NA 1.00000 20000.0000 0 0
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128.63 Celsius NA 0.00000 10000.0000 0 0
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129.63 prop 1 0.00000 1.0000 18 -3
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130.63 prop 1 0.00000 1.0000 18 -3
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131.63 prop 1 0.00000 1.0000 18 -3
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132.63 prop 1 0.00000 1.0000 18 -3
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133.63 prop 1 0.00000 1.0000 18 -3
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134.63 prop 1 0.00000 1.0000 18 -3
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135.63 prop 1 0.00000 1.0000 18 -3
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136.63 prop 1 0.00000 1.0000 18 -3
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137.63 m2/kg NA 0.00000 2.0000 0 0
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138.63 prop NA 0.00000 0.0000 0 0
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139.63 Celsius NA 1.00000 20000.0000 0 0
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128.64 Celsius NA 0.00000 10000.0000 0 0
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129.64 prop 1 0.00000 1.0000 19 -3
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130.64 prop 1 0.00000 1.0000 19 -3
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131.64 prop 1 0.00000 1.0000 19 -3
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132.64 prop 1 0.00000 1.0000 19 -3
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133.64 prop 1 0.00000 1.0000 19 -3
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134.64 prop 1 0.00000 1.0000 19 -3
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135.64 prop 1 0.00000 1.0000 19 -3
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136.64 prop 1 0.00000 1.0000 19 -3
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137.64 m2/kg NA 0.00000 2.0000 0 0
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138.64 prop NA 0.00000 0.0000 0 0
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139.64 Celsius NA 1.00000 20000.0000 0 0
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128.65 Celsius NA 0.00000 10000.0000 0 0
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129.65 prop 1 0.00000 1.0000 20 -3
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130.65 prop 1 0.00000 1.0000 20 -3
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131.65 prop 1 0.00000 1.0000 20 -3
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132.65 prop 1 0.00000 1.0000 20 -3
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133.65 prop 1 0.00000 1.0000 20 -3
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134.65 prop 1 0.00000 1.0000 20 -3
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135.65 prop 1 0.00000 1.0000 20 -3
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136.65 prop 1 0.00000 1.0000 20 -3
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137.65 m2/kg NA 0.00000 2.0000 0 0
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138.65 prop NA 0.00000 0.0000 0 0
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139.65 Celsius NA 1.00000 20000.0000 0 0
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128.66 Celsius NA 0.00000 10000.0000 0 0
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129.66 prop 1 0.00000 1.0000 21 -3
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130.66 prop 1 0.00000 1.0000 21 -3
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131.66 prop 1 0.00000 1.0000 21 -3
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132.66 prop 1 0.00000 1.0000 21 -3
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133.66 prop 1 0.00000 1.0000 21 -3
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134.66 prop 1 0.00000 1.0000 21 -3
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135.66 prop 1 0.00000 1.0000 21 -3
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136.66 prop 1 0.00000 1.0000 21 -3
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137.66 m2/kg NA 0.00000 2.0000 0 0
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138.66 prop NA 0.00000 0.0000 0 0
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139.66 Celsius NA 1.00000 20000.0000 0 0
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